Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | ACD593_RS08135 | Genome accession | NZ_CP168217 |
| Coordinates | 1712460..1713065 (+) | Length | 201 a.a. |
| NCBI ID | WP_001202375.1 | Uniprot ID | A0A5I0N148 |
| Organism | Salmonella enterica subsp. enterica serovar Infantis strain FL2022-12 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1678859..1721325 | 1712460..1713065 | within | 0 |
Gene organization within MGE regions
Location: 1678859..1721325
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACD593_RS08005 (ACD593_08010) | ldtD | 1678899..1680746 (+) | 1848 | WP_000925896.1 | L,D-transpeptidase | - |
| ACD593_RS08010 (ACD593_08015) | - | 1681006..1681554 (+) | 549 | WP_000357052.1 | YcbK family protein | - |
| ACD593_RS08015 (ACD593_08020) | - | 1681582..1682229 (+) | 648 | WP_001109471.1 | MBL fold metallo-hydrolase | - |
| ACD593_RS08020 (ACD593_08025) | - | 1682327..1683582 (+) | 1256 | WP_086016038.1 | IS3-like element ISSen1 family transposase | - |
| ACD593_RS08025 (ACD593_08030) | aspC | 1683606..1684796 (-) | 1191 | WP_000462653.1 | aspartate transaminase | - |
| ACD593_RS08030 (ACD593_08035) | ompF | 1684981..1686072 (-) | 1092 | WP_000977709.1 | porin OmpF | - |
| ACD593_RS08035 (ACD593_08040) | asnS | 1686679..1688079 (-) | 1401 | WP_023993514.1 | asparagine--tRNA ligase | - |
| ACD593_RS08040 (ACD593_08045) | - | 1688280..1688741 (-) | 462 | WP_000762342.1 | Lrp/AsnC family transcriptional regulator | - |
| ACD593_RS08045 (ACD593_08050) | dpaL | 1689058..1690272 (+) | 1215 | WP_020438006.1 | diaminopropionate ammonia-lyase | - |
| ACD593_RS08050 (ACD593_08055) | - | 1690518..1691951 (+) | 1434 | WP_000893191.1 | alanine/glycine:cation symporter family protein | - |
| ACD593_RS08055 (ACD593_08060) | pncB | 1692032..1693234 (-) | 1203 | WP_023993513.1 | nicotinate phosphoribosyltransferase | - |
| ACD593_RS08060 (ACD593_08065) | pepN | 1693501..1696113 (+) | 2613 | WP_023993512.1 | aminopeptidase N | - |
| ACD593_RS08065 (ACD593_08070) | pyrD | 1696321..1697331 (+) | 1011 | WP_000291723.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| ACD593_RS08070 (ACD593_08075) | zapC | 1697497..1698039 (+) | 543 | WP_023993511.1 | cell division protein ZapC | - |
| ACD593_RS08075 (ACD593_08080) | - | 1698036..1699145 (-) | 1110 | WP_023993510.1 | YcbX family protein | - |
| ACD593_RS08080 (ACD593_08085) | rlmKL | 1699244..1701352 (+) | 2109 | WP_023993509.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| ACD593_RS08085 (ACD593_08090) | - | 1701365..1703272 (+) | 1908 | WP_023993508.1 | ABC transporter ATP-binding protein | - |
| ACD593_RS08090 (ACD593_08095) | pqiA | 1703287..1704540 (+) | 1254 | WP_000333152.1 | membrane integrity-associated transporter subunit PqiA | - |
| ACD593_RS08095 (ACD593_08100) | pqiB | 1704545..1706185 (+) | 1641 | WP_000433414.1 | intermembrane transport protein PqiB | - |
| ACD593_RS08100 (ACD593_08105) | pqiC | 1706182..1706745 (+) | 564 | WP_000759136.1 | membrane integrity-associated transporter subunit PqiC | - |
| ACD593_RS08105 (ACD593_08110) | rmf | 1707001..1707168 (+) | 168 | WP_001537784.1 | ribosome modulation factor | - |
| ACD593_RS08110 (ACD593_08115) | fabA | 1707268..1707786 (-) | 519 | WP_000227928.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| ACD593_RS08115 (ACD593_08120) | - | 1707855..1709615 (-) | 1761 | WP_000156457.1 | AAA family ATPase | - |
| ACD593_RS08120 (ACD593_08125) | matP | 1709801..1710253 (+) | 453 | WP_000877172.1 | macrodomain Ter protein MatP | - |
| ACD593_RS08125 (ACD593_08130) | ompA | 1710325..1711377 (-) | 1053 | WP_001670727.1 | porin OmpA | - |
| ACD593_RS08130 (ACD593_08135) | sulA | 1711734..1712243 (-) | 510 | WP_000288732.1 | SOS-induced cell division inhibitor SulA | - |
| ACD593_RS08135 (ACD593_08140) | sxy/tfoX | 1712460..1713065 (+) | 606 | WP_001202375.1 | TfoX/Sxy family DNA transformation protein | Regulator |
| ACD593_RS08140 (ACD593_08145) | yccS | 1713052..1715205 (-) | 2154 | WP_000950876.1 | YccS family putative transporter | - |
| ACD593_RS08145 (ACD593_08150) | - | 1715224..1715670 (-) | 447 | WP_023993507.1 | YccF domain-containing protein | - |
| ACD593_RS08150 (ACD593_08155) | helD | 1715794..1717848 (+) | 2055 | WP_023993506.1 | DNA helicase IV | - |
| ACD593_RS08155 (ACD593_08160) | mgsA | 1717884..1718342 (-) | 459 | WP_023993505.1 | methylglyoxal synthase | - |
| ACD593_RS08160 (ACD593_08165) | - | 1718437..1719099 (-) | 663 | WP_000847719.1 | DUF2057 family protein | - |
| ACD593_RS08165 (ACD593_08170) | - | 1719273..1719686 (+) | 414 | WP_001537782.1 | CoA-binding protein | - |
| ACD593_RS08170 (ACD593_08175) | hspQ | 1719731..1720048 (-) | 318 | WP_000561983.1 | heat shock protein HspQ | - |
| ACD593_RS08175 (ACD593_08180) | rlmI | 1720106..1721317 (-) | 1212 | WP_000140480.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
Sequence
Protein
Download Length: 201 a.a. Molecular weight: 23174.94 Da Isoelectric Point: 8.7403
>NTDB_id=1043154 ACD593_RS08135 WP_001202375.1 1712460..1713065(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Infantis strain FL2022-12]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG
Nucleotide
Download Length: 606 bp
>NTDB_id=1043154 ACD593_RS08135 WP_001202375.1 1712460..1713065(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Infantis strain FL2022-12]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
75.879 |
99.005 |
0.751 |