Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8663_RS03335 Genome accession   NZ_AP028331
Coordinates   637808..638245 (+) Length   145 a.a.
NCBI ID   WP_002873332.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10091     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 632808..643245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8663_RS03305 (B10091_06520) - 633433..634126 (+) 694 Protein_637 hypothetical protein -
  R8663_RS03310 (B10091_06530) - 634141..634887 (+) 747 WP_317676055.1 DUF4118 domain-containing protein -
  R8663_RS03315 (B10091_06540) - 634968..635120 (+) 153 WP_224374383.1 hypothetical protein -
  R8663_RS03320 (B10091_06550) uvrB 635222..637195 (-) 1974 WP_032587385.1 excinuclease ABC subunit UvrB -
  R8663_RS03325 (B10091_06560) - 637349..637579 (+) 231 WP_002852327.1 hypothetical protein -
  R8663_RS03330 (B10091_06570) - 637569..637811 (+) 243 WP_002854947.1 hypothetical protein -
  R8663_RS03335 (B10091_06580) Cj0683 637808..638245 (+) 438 WP_002873332.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  R8663_RS03340 (B10091_06590) priA 638227..640080 (+) 1854 WP_317676056.1 primosomal protein N' -
  R8663_RS03345 cipA 640090..641487 (-) 1398 Protein_645 DUF2972 domain-containing protein -
  R8663_RS03350 (B10091_06620) ispG 641633..642706 (+) 1074 WP_002859602.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16779.83 Da        Isoelectric Point: 8.4582

>NTDB_id=104302 R8663_RS03335 WP_002873332.1 637808..638245(+) (Cj0683) [Campylobacter jejuni strain BCH-10091]
MNKAFTLLELVFVILILGILSSLSLSFIKTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=104302 R8663_RS03335 WP_002873332.1 637808..638245(+) (Cj0683) [Campylobacter jejuni strain BCH-10091]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAAGACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993

Multiple sequence alignment