Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABQ054_RS16795 Genome accession   NZ_CP168190
Coordinates   3943592..3944986 (+) Length   464 a.a.
NCBI ID   WP_074058079.1    Uniprot ID   A0A9X4BT79
Organism   Xanthomonas hortorum pv. hederae strain WHRI 7714     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3938592..3949986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ054_RS16780 (ABQ054_016780) sucD 3939530..3940405 (-) 876 WP_104551196.1 succinate--CoA ligase subunit alpha -
  ABQ054_RS16785 (ABQ054_016785) sucC 3940430..3941599 (-) 1170 WP_006450728.1 ADP-forming succinate--CoA ligase subunit beta -
  ABQ054_RS16790 (ABQ054_016790) - 3941833..3943446 (+) 1614 WP_104551197.1 PAS domain-containing sensor histidine kinase -
  ABQ054_RS16795 (ABQ054_016795) pilR 3943592..3944986 (+) 1395 WP_074058079.1 sigma-54 dependent transcriptional regulator Regulator
  ABQ054_RS16800 (ABQ054_016800) - 3945058..3945240 (+) 183 WP_104551199.1 YhfG family protein -
  ABQ054_RS16805 (ABQ054_016805) - 3945237..3945836 (+) 600 WP_104551200.1 Fic family protein -
  ABQ054_RS16810 (ABQ054_016810) pilB 3945879..3947615 (-) 1737 WP_104551201.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQ054_RS16815 (ABQ054_016815) - 3947657..3948070 (-) 414 WP_104551202.1 pilin -
  ABQ054_RS16820 (ABQ054_016820) comP 3948167..3948595 (-) 429 WP_104551203.1 pilin Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50235.61 Da        Isoelectric Point: 6.3587

>NTDB_id=1042976 ABQ054_RS16795 WP_074058079.1 3943592..3944986(+) (pilR) [Xanthomonas hortorum pv. hederae strain WHRI 7714]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEISKQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASTESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1042976 ABQ054_RS16795 WP_074058079.1 3943592..3944986(+) (pilR) [Xanthomonas hortorum pv. hederae strain WHRI 7714]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCTGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAACCCTTACGATCTCTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAACTGGTCACCGAAATCTCAAAGCAATATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTAGAAGCGCTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAACTGAACAACCGCGACCGCCCCGCCCCGCCCCCCCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTGTATATCGTCGGCGAATCGGGCGTGGGCAAGGAGTTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGCGCCGCCGGCCCGTTCGTGCCGGTGAACTGCGGCGCCATTCCCGCCGAATTGATGGAGAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGTACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAACTGCTGCGCGCCATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCTACCGAATCGCTGGTGGACGTGCGCATCCTCTCTGCCACCCACAAGGACCTCGGCGACCTGGTCTCCGACGGCCGTT
TTCGTCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCAGCGGCGACCTGCCG
CAACTGGCCGCCGCCATTATCGCGCGCCTGGCACGCAGCCACGGCCGTCCGATTCCGCTGCTGACCCAATCCGCGCTCGA
CGCGCTGGACACATACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGACCTGCGCCTACCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCGTATATCGAGCAGCTGGAACGCGC
CGCGATCCAGAAAGCGCTGGAAGAGAATCGTTGGAACAAGACCAGAACCGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

99.784

0.631
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment