Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QGS86_RS17180 Genome accession   NZ_OX460336
Coordinates   3468839..3469444 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain EC0026B isolate EC0026B_R1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3463839..3474444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGS86_RS17160 aes 3463876..3464835 (+) 960 WP_032201607.1 acetyl esterase -
  QGS86_RS17165 hemH 3464832..3465794 (-) 963 WP_001250117.1 ferrochelatase -
  QGS86_RS17170 adk 3466030..3466674 (-) 645 WP_001220233.1 adenylate kinase -
  QGS86_RS17175 htpG 3466855..3468729 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QGS86_RS17180 recR 3468839..3469444 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QGS86_RS17185 ybaB 3469444..3469773 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QGS86_RS17190 dnaX 3469826..3471757 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  QGS86_RS17195 apt 3471886..3472437 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QGS86_RS17200 ybaN 3472590..3472967 (-) 378 WP_001188905.1 DUF454 family protein -
  QGS86_RS17205 priC 3473037..3473564 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  QGS86_RS17210 rsmS 3473578..3473739 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1042771 QGS86_RS17180 WP_001195025.1 3468839..3469444(-) (recR) [Escherichia coli strain EC0026B isolate EC0026B_R1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1042771 QGS86_RS17180 WP_001195025.1 3468839..3469444(-) (recR) [Escherichia coli strain EC0026B isolate EC0026B_R1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment