Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   QGS86_RS03895 Genome accession   NZ_OX460336
Coordinates   814752..815987 (-) Length   411 a.a.
NCBI ID   WP_032205596.1    Uniprot ID   -
Organism   Escherichia coli strain EC0026B isolate EC0026B_R1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 809752..820987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGS86_RS03885 - 812065..813438 (+) 1374 WP_021516455.1 bifunctional cytidylyltransferase/SDR family oxidoreductase -
  QGS86_RS03890 - 813455..814591 (+) 1137 WP_021516454.1 hypothetical protein -
  QGS86_RS03895 kpsS 814752..815987 (-) 1236 WP_032205596.1 capsule biosynthesis protein Regulator
  QGS86_RS03900 - 816022..818049 (-) 2028 WP_032201841.1 capsular polysaccharide biosynthesis protein -
  QGS86_RS03905 kdsB 818046..818786 (-) 741 WP_001596179.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QGS86_RS03910 - 818796..820472 (-) 1677 WP_001331697.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 49025.52 Da        Isoelectric Point: 10.0138

>NTDB_id=1042736 QGS86_RS03895 WP_032205596.1 814752..815987(-) (kpsS) [Escherichia coli strain EC0026B isolate EC0026B_R1]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVRTQINGVYYGDRCFEHDIKV
DKDSWSLTRQV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=1042736 QGS86_RS03895 WP_032205596.1 814752..815987(-) (kpsS) [Escherichia coli strain EC0026B isolate EC0026B_R1]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTTAG
TGATGTTGCCGAGTGGCTAGAGTCATTAGGTCGTAACGCTGTGAATGTAGTATTCAACGGCGGGGATCGTTTTTACTGCC
GTCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCATCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCTCGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AAGTATTGCCGCGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGAGATTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCAAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAACGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTGTTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATATCTGCGCTGATTCACAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAGGACGCAGATTAATGGGGTTTATTATGGTGATAGATGTTTTGAACATGATATTAAGGTG
GATAAGGATTCTTGGAGTCTTACACGTCAAGTTTGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.898

95.134

0.38

Multiple sequence alignment