Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   O0236_RS03650 Genome accession   NZ_CP168151
Coordinates   735375..736742 (+) Length   455 a.a.
NCBI ID   WP_268912766.1    Uniprot ID   -
Organism   Lentilactobacillus terminaliae strain SPB1-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 730375..741742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0236_RS03625 (O0236_003625) - 730668..731633 (+) 966 WP_268912761.1 AEC family transporter -
  O0236_RS03630 (O0236_003630) - 731737..732408 (+) 672 WP_268912762.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  O0236_RS03635 (O0236_003635) - 732431..733765 (-) 1335 WP_268912763.1 aminopeptidase C -
  O0236_RS03640 (O0236_003640) rpiA 733903..734583 (-) 681 WP_268912764.1 ribose-5-phosphate isomerase RpiA -
  O0236_RS03645 (O0236_003645) - 734722..735261 (+) 540 WP_268912765.1 dUTP diphosphatase -
  O0236_RS03650 (O0236_003650) radA 735375..736742 (+) 1368 WP_268912766.1 DNA repair protein RadA Machinery gene
  O0236_RS03655 (O0236_003655) - 736757..737893 (+) 1137 WP_268912767.1 PIN/TRAM domain-containing protein -
  O0236_RS03660 (O0236_003660) gltX 738024..739514 (+) 1491 WP_268912768.1 glutamate--tRNA ligase -
  O0236_RS03665 (O0236_003665) cysS 739668..741077 (+) 1410 WP_268912769.1 cysteine--tRNA ligase -
  O0236_RS03670 (O0236_003670) - 741083..741496 (+) 414 WP_268912770.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48844.90 Da        Isoelectric Point: 5.7488

>NTDB_id=1042664 O0236_RS03650 WP_268912766.1 735375..736742(+) (radA) [Lentilactobacillus terminaliae strain SPB1-3]
MAKVKTQFVCQNCGYISPRYLGRCPNCNEWNTLVEETISKPVASSLATPNNGIHNNQPEPITQVKFQSETRSDTGLSELD
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGNLAKHSKVLYISGEESASQIKMRADRLAVGGDDLLVYPETDMNVIKTA
INDVQPDIVVIDSVQTMQIPELQSATGSVAQIREVTADLMSIAKGQGITVFVVGHVTKGGAIAGPKILEHMVDTVLYFEG
DLHHSYRILRAVKNRFGSTNELGVFEMREDGLAEVSNPSEIFLEERLQDANGSAIVVSMEGTRPILVEIQALVTSSVFGN
AQRTATGLDRNRVSLIMAVLEKRAGLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYRNTGTNPTECFVGELGLTGE
VRRVNRIEQRVQEAQKLGFTRIIVPANNLSGWTAPKGIEVIGVKTISQALKIALG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1042664 O0236_RS03650 WP_268912766.1 735375..736742(+) (radA) [Lentilactobacillus terminaliae strain SPB1-3]
TTGGCAAAAGTAAAAACTCAGTTTGTGTGCCAAAATTGTGGCTATATCTCACCTAGATATTTAGGCCGGTGTCCTAACTG
TAATGAATGGAATACTTTAGTAGAAGAAACTATTTCCAAACCTGTAGCAAGCTCATTGGCTACCCCAAACAATGGAATTC
ATAATAATCAACCAGAACCTATTACACAGGTAAAATTTCAATCTGAAACACGATCTGACACAGGACTATCTGAATTAGAT
CGTGTTCTTGGTGGTGGTGTCGTGCCAGGATCGCTTGTACTGATTGGTGGAGATCCCGGTATTGGTAAATCTACATTGCT
ACTGCAAGTTTCTGGTAATTTAGCCAAACATTCAAAGGTGTTATACATTTCCGGTGAAGAAAGTGCCAGTCAAATCAAGA
TGCGTGCAGACCGATTAGCAGTTGGTGGAGACGATTTACTGGTATATCCTGAAACAGATATGAATGTTATTAAAACTGCA
ATCAACGATGTTCAACCAGACATCGTAGTGATTGATTCCGTCCAAACGATGCAGATTCCAGAGTTACAGTCTGCTACTGG
ATCAGTTGCTCAGATTCGTGAGGTTACTGCTGACTTAATGAGCATCGCTAAGGGACAGGGCATAACCGTGTTTGTCGTCG
GCCATGTTACTAAGGGCGGCGCCATTGCAGGACCCAAAATCTTAGAGCACATGGTAGATACTGTACTTTATTTTGAAGGT
GACCTTCATCATTCATACCGAATCTTACGTGCCGTTAAAAACCGGTTTGGTTCAACGAACGAGCTGGGTGTGTTTGAGAT
GCGTGAAGATGGATTGGCAGAAGTTAGTAATCCTTCAGAAATATTTTTAGAGGAGCGATTGCAAGATGCAAACGGTTCGG
CAATCGTTGTTTCAATGGAAGGTACCAGACCTATTCTTGTTGAAATTCAGGCTTTAGTGACTTCTTCAGTATTTGGCAAT
GCTCAACGTACTGCTACTGGACTTGATCGTAATCGAGTTTCCTTAATTATGGCTGTTTTAGAAAAAAGAGCTGGGCTGAT
GTTACAAAACCAAGATGCATATTTGAAGGCGGCTGGTGGTGTTAAACTAGACGAACCTGCTATTGATTTAGCAATCGCGG
TCAGCATTGCTTCTTCATATAGAAACACAGGTACTAATCCTACTGAATGTTTTGTAGGTGAATTAGGATTAACTGGTGAA
GTCCGTAGAGTCAATCGAATTGAGCAGCGGGTTCAAGAAGCTCAAAAACTTGGGTTCACTAGAATTATCGTACCAGCAAA
CAATTTGTCAGGTTGGACGGCTCCAAAAGGTATTGAAGTAATTGGAGTTAAAACTATTTCTCAAGCGTTAAAGATTGCGT
TAGGGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-220)

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.427

100

0.657
  radA Streptococcus mitis NCTC 12261

64.523

99.121

0.64
  radA Streptococcus pneumoniae Rx1

64.302

99.121

0.637
  radA Streptococcus pneumoniae D39

64.302

99.121

0.637
  radA Streptococcus pneumoniae R6

64.302

99.121

0.637
  radA Streptococcus pneumoniae TIGR4

64.302

99.121

0.637
  radA Streptococcus mitis SK321

64.08

99.121

0.635

Multiple sequence alignment