Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACEF29_RS18575 Genome accession   NZ_CP168150
Coordinates   3707862..3708551 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain CM19     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3702862..3713551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEF29_RS18540 (ACEF29_18540) - 3703060..3703542 (-) 483 WP_053574009.1 flagellar protein FlgN -
  ACEF29_RS18545 (ACEF29_18545) flgM 3703557..3703823 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACEF29_RS18550 (ACEF29_18550) - 3703893..3704312 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  ACEF29_RS18555 (ACEF29_18555) comFC 3704386..3705075 (-) 690 WP_199910801.1 phosphoribosyltransferase family protein Machinery gene
  ACEF29_RS18560 (ACEF29_18560) - 3705081..3705365 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACEF29_RS18565 (ACEF29_18565) comFA 3705423..3706808 (-) 1386 WP_053574011.1 DEAD/DEAH box helicase Machinery gene
  ACEF29_RS18570 (ACEF29_18570) - 3706916..3707764 (-) 849 WP_053574012.1 DegV family protein -
  ACEF29_RS18575 (ACEF29_18575) degU 3707862..3708551 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACEF29_RS18580 (ACEF29_18580) degS 3708628..3709791 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACEF29_RS18585 (ACEF29_18585) - 3710014..3710661 (+) 648 WP_003151384.1 YigZ family protein -
  ACEF29_RS18590 (ACEF29_18590) - 3710666..3711880 (+) 1215 WP_015418337.1 LCP family protein -
  ACEF29_RS18595 (ACEF29_18595) - 3711979..3713055 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1042646 ACEF29_RS18575 WP_003219701.1 3707862..3708551(-) (degU) [Bacillus velezensis strain CM19]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1042646 ACEF29_RS18575 WP_003219701.1 3707862..3708551(-) (degU) [Bacillus velezensis strain CM19]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCTATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment