Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB9L16_RS22240 Genome accession   NZ_CP168138
Coordinates   4919704..4921071 (-) Length   455 a.a.
NCBI ID   WP_095181861.1    Uniprot ID   -
Organism   Pseudomonas sp. LW8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4914704..4926071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L16_RS22215 (AB9L16_22215) - 4914776..4915480 (+) 705 WP_375122710.1 GntR family transcriptional regulator -
  AB9L16_RS22220 (AB9L16_22220) yjiA 4915594..4916571 (-) 978 WP_375122711.1 GTPase -
  AB9L16_RS22225 (AB9L16_22225) - 4916724..4916921 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  AB9L16_RS22230 (AB9L16_22230) - 4916937..4919003 (-) 2067 WP_041477781.1 carbon starvation CstA family protein -
  AB9L16_RS22235 (AB9L16_22235) - 4919163..4919531 (+) 369 WP_252868313.1 PilZ domain-containing protein -
  AB9L16_RS22240 (AB9L16_22240) radA 4919704..4921071 (-) 1368 WP_095181861.1 DNA repair protein RadA Machinery gene
  AB9L16_RS22245 (AB9L16_22245) - 4921119..4921664 (-) 546 WP_150638460.1 ankyrin repeat domain-containing protein -
  AB9L16_RS22250 (AB9L16_22250) katB 4921725..4923266 (-) 1542 WP_310220159.1 catalase KatB -
  AB9L16_RS22255 (AB9L16_22255) mscL 4923552..4923965 (+) 414 WP_024014404.1 large-conductance mechanosensitive channel protein MscL -
  AB9L16_RS22260 (AB9L16_22260) - 4924011..4924787 (-) 777 WP_375122712.1 ferredoxin--NADP reductase -
  AB9L16_RS22265 (AB9L16_22265) - 4925101..4925811 (+) 711 WP_041477771.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48747.21 Da        Isoelectric Point: 6.8987

>NTDB_id=1042511 AB9L16_RS22240 WP_095181861.1 4919704..4921071(-) (radA) [Pseudomonas sp. LW8]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPTGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1042511 AB9L16_RS22240 WP_095181861.1 4919704..4921071(-) (radA) [Pseudomonas sp. LW8]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGGCAGTGCGGCGAGTG
CGGTGCCTGGAACACCCTGACCGAAACCATGATCGAAAGCGGCGGCGCCACGGCACCTACCGGGCGCACCGGTTGGGCTG
GCCAGCAGGCGCAGATCAAGACGCTCGCCGAAGTCAGCATCGAAGAGATTCCACGTTTTTCCACCGCCTCCGGTGAGCTC
GACCGCGTGCTCGGCGGTGGTCTGGTCGATGGCTCGGTTGTGCTGATCGGCGGTGATCCGGGGATCGGCAAATCGACCAT
TCTGTTGCAAACCCTGTGCAATCTGGCCAAAAGCATGCCGGCGCTGTACGTCACTGGTGAGGAATCCCAGCAGCAGGTGG
CGATGCGCGCCCGCCGTCTCGGCCTGCCGCAGGATCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATTGCC
ACCGCCCGCCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAACAACTGCAATCGGCCCC
GGGCGGCGTGTCGCAGGTGCGCGAGAGTGCGGCGCTGCTGGTGCGTTACGCCAAACAGAGCGGCACGGCGATCTTCCTCG
TCGGCCACGTCACCAAAGAGGGCGCCTTGGCCGGTCCGCGTGTTCTGGAACACATGGTCGATACCGTGCTGTATTTCGAA
GGTGAATCCGATGGTCGTCTGCGTCTGCTGCGTGCGGTGAAGAACCGTTTTGGCGCGGTCAACGAATTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCATCGGCGATTTTTCTTACCCGCGCTCAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCGACGTGGGAAGGCACCCGACCGATGCTGGTGGAAGTGCAGGCGCTGGTCGACGACAGCCATCTGGCC
AACCCGCGTCGGGTGACGCTGGGCCTGGATCAGAACCGATTGGCTATGTTACTCGCGGTGTTGCACCGCCACGGCGGGAT
TCCGACCCACGATCAGGACGTCTTCCTCAACGTGGTCGGTGGCGTGAAGGTGCTGGAGACAGCGTCGGATCTGGCGTTGA
TGGCGGCGGTGATGTCGAGTTTGCGCAATCGGCCGTTACCGCATGATCTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAGGTGCGCCCGGTGCCAAGCGGGCAGGAGCGGCTGAAAGAAGCGGCCAAGCACGGTTTCAAACGCGCCATCGTGCCGAA
GGGTAATGCTCCGAAGGAATCGCCGGCGGGGTTGCAGATCATTGCCGTGACCCGCCTTGAACAAGCACTTGACGCACTGT
TTGAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.272

100

0.464
  radA Streptococcus pneumoniae D39

46.272

100

0.464
  radA Streptococcus pneumoniae R6

46.272

100

0.464
  radA Streptococcus pneumoniae TIGR4

46.272

100

0.464
  radA Streptococcus mitis SK321

46.272

100

0.464
  radA Streptococcus mitis NCTC 12261

46.053

100

0.462

Multiple sequence alignment