Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACDZ29_RS08590 Genome accession   NZ_CP168135
Coordinates   1651547..1652497 (-) Length   316 a.a.
NCBI ID   WP_289314460.1    Uniprot ID   -
Organism   Peribacillus sp. RS7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1646547..1657497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ29_RS08575 (ACDZ29_08500) - 1648698..1649642 (-) 945 WP_370017117.1 siderophore ABC transporter substrate-binding protein -
  ACDZ29_RS08580 (ACDZ29_08505) - 1649855..1650613 (-) 759 WP_289326896.1 ABC transporter ATP-binding protein -
  ACDZ29_RS08585 (ACDZ29_08510) - 1650607..1651554 (-) 948 WP_289326897.1 iron chelate uptake ABC transporter family permease subunit -
  ACDZ29_RS08590 (ACDZ29_08515) ceuB 1651547..1652497 (-) 951 WP_289314460.1 ABC transporter permease Machinery gene
  ACDZ29_RS08595 (ACDZ29_08520) - 1652747..1653109 (+) 363 WP_289314459.1 DUF1450 domain-containing protein -
  ACDZ29_RS08600 (ACDZ29_08525) - 1653507..1655162 (+) 1656 WP_289326898.1 M14 family metallocarboxypeptidase -
  ACDZ29_RS08605 (ACDZ29_08530) shc 1655332..1657227 (+) 1896 WP_375090663.1 squalene--hopene cyclase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34900.25 Da        Isoelectric Point: 9.5025

>NTDB_id=1042457 ACDZ29_RS08590 WP_289314460.1 1651547..1652497(-) (ceuB) [Peribacillus sp. RS7]
MKIRYLVMALIVLSFTSLFIGVKDITPLDLLDLSDDKVQIMLQSRFPRMMAIVIAGVVMSISGLIMQQLSRNKFVSPTTA
GTMDSARLGLLLAIIIFPSAALIEKMAFAFIFALAGTFLFMKILDQVKYKDTIFIPLVGLMFGNIVGSISTFFAYKYDLI
QSLNTWMNGDFSMIMSGRYELIYVSIPLVILAYFFANKFTVAGMGEEFAINLGLNYKLIVNFGLIIVALSSTVVLLTVGT
IPFIGLIVPNIVSLYLGDNLKKSLSHTALLGAVFLLICDILGRIIIYPFEIPIGLVVGVIGSAVFIYLIMRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1042457 ACDZ29_RS08590 WP_289314460.1 1651547..1652497(-) (ceuB) [Peribacillus sp. RS7]
ATGAAGATAAGATATTTAGTCATGGCGTTAATTGTATTATCATTTACGTCATTATTCATTGGTGTAAAAGATATTACCCC
CCTGGATTTATTGGATCTAAGTGATGATAAAGTGCAAATCATGCTGCAAAGCCGTTTCCCCAGAATGATGGCCATAGTCA
TTGCCGGTGTTGTGATGAGTATAAGCGGTCTGATCATGCAGCAATTGAGCCGAAACAAATTTGTATCCCCGACGACTGCC
GGTACCATGGATTCTGCAAGGCTTGGACTTCTTCTTGCCATCATCATTTTCCCTTCGGCAGCACTTATAGAGAAAATGGC
ATTCGCTTTCATATTCGCTTTGGCAGGTACGTTCTTGTTCATGAAAATTCTTGATCAAGTGAAATATAAGGATACGATAT
TCATTCCACTGGTCGGTTTGATGTTTGGTAATATCGTCGGATCCATCTCGACTTTCTTTGCTTATAAATATGATTTGATT
CAAAGCCTTAACACATGGATGAATGGAGATTTCTCGATGATCATGTCGGGAAGGTACGAACTTATATATGTAAGTATCCC
TCTAGTCATTCTCGCATACTTCTTTGCCAATAAATTCACTGTGGCAGGGATGGGTGAGGAGTTTGCTATCAATCTAGGAC
TCAATTATAAACTTATAGTCAATTTTGGGTTGATCATCGTGGCATTATCCTCCACTGTCGTCCTGTTAACGGTGGGAACG
ATTCCTTTCATAGGATTGATCGTACCAAATATTGTATCCCTATACCTTGGTGATAATTTGAAAAAGAGTCTTTCTCATAC
AGCATTGCTAGGGGCAGTATTCCTATTGATCTGCGATATTCTGGGCAGGATCATCATATATCCATTTGAAATCCCGATCG
GACTCGTGGTTGGTGTGATAGGAAGCGCCGTATTCATCTATCTGATTATGAGGAGAAAGGCATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50

100

0.5

Multiple sequence alignment