Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACDZ29_RS01955 Genome accession   NZ_CP168135
Coordinates   367589..369964 (-) Length   791 a.a.
NCBI ID   WP_289325892.1    Uniprot ID   -
Organism   Peribacillus sp. RS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 362589..374964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ29_RS01940 (ACDZ29_01940) dtd 364113..364556 (-) 444 WP_289325890.1 D-aminoacyl-tRNA deacylase -
  ACDZ29_RS01945 (ACDZ29_01945) - 364572..366770 (-) 2199 WP_289325891.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ACDZ29_RS01950 (ACDZ29_01950) - 367086..367598 (-) 513 WP_061464220.1 adenine phosphoribosyltransferase -
  ACDZ29_RS01955 (ACDZ29_01955) recJ 367589..369964 (-) 2376 WP_289325892.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACDZ29_RS01960 (ACDZ29_01960) secDF 370109..372370 (-) 2262 WP_375089677.1 protein translocase subunit SecDF -
  ACDZ29_RS01965 (ACDZ29_01965) - 372558..372863 (-) 306 WP_289315508.1 post-transcriptional regulator -
  ACDZ29_RS01970 (ACDZ29_01970) spoVB 373034..374596 (+) 1563 WP_375089680.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 88976.31 Da        Isoelectric Point: 4.8039

>NTDB_id=1042446 ACDZ29_RS01955 WP_289325892.1 367589..369964(-) (recJ) [Peribacillus sp. RS7]
MLKPKTRWNLRTADENKVAALAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIREAIQNG
EKIRIFGDYDADGVTSTTVMMTALTRLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAIDEAKLAGEL
GMDYILTDHHEPGPELPEALAIIHPKLEGSSYPFKDLAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLQGENRVI
AAKGIEQLRLTRRPGLVALMKVANVQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSESLEEATELANEINDINKE
RQAMVAEMAEEAISEVEENFPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDREKGYAKGSARSIAGFDLF
ESLSTCRELLPHFGGHPMAAGMTLKIEDVQELRDRMNLIAKEQLNEEDFTPITNLDGATTLAEVSVQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSARKIGANQNHLKVQLEDGENHKLDGVGFGLGHFVDELAPHAEVSVIGELSINEWNNMKKPQIFV
QDVSVNHWQLFDYRGKGQAEKWLADIPAQNRKIVIFSEDIYSRYPFLRNHPDLVHIKNEQDADQLDCLEGHVVFMDMPPL
REYLKRVIANKNPSRIYAHLSHEQDHFLSTMPTRDHFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFEL
DFVTIENGLIMLTTNAKKRDLSESESYIRKKEQFELEQELVYSSYQQLFDWFNHYLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=1042446 ACDZ29_RS01955 WP_289325892.1 367589..369964(-) (recJ) [Peribacillus sp. RS7]
ATGTTAAAGCCAAAAACTCGGTGGAACCTGCGAACTGCCGATGAAAACAAAGTTGCTGCACTAGCTGAAGAGCTCCATAT
CACACCTTTGGTTGCAGCGTTGCTTGTGAATCGAGGCCTGGATACGATTGAAAGTGCCCGATCATTTTTATTTGTAAAAA
ATCAAACTTTTCATGATCCATTTTTATTGAAAGATATGGATAAAGCAGTATATAGAATAAGAGAAGCCATTCAAAATGGA
GAAAAAATACGTATATTCGGTGATTATGACGCGGATGGCGTGACATCGACCACAGTGATGATGACGGCACTAACGAGATT
GGGAGCCGATGTGGATTTTTATATCCCGAATCGGTTTACAGAGGGGTATGGACCGAATCCAATGGCGTTCCGCCTTGCAG
CTGAGCAAGGGGTGAAGGTATTGATAACCGTCGATACAGGAATTTCTGCAATCGATGAAGCGAAGCTTGCCGGAGAGCTT
GGAATGGATTATATTTTGACCGACCACCATGAACCGGGACCGGAATTGCCTGAAGCATTGGCAATCATCCATCCTAAACT
TGAGGGCAGTTCCTATCCATTTAAAGACCTTGCGGGTGTAGGGGTCGCTTTTAAGCTGGCACACGCCTTGCTTGGAGAAT
TGCCTGAGGATTTACTTGAAATAGCGGCAATTGGCACCATAGCGGATTTAGTGCCTTTACAAGGGGAAAACCGCGTCATT
GCTGCAAAAGGCATCGAGCAGTTACGTTTGACCCGCCGTCCTGGACTTGTTGCATTAATGAAAGTGGCGAATGTTCAGCA
GGAAGCATTGAATGAAGAATCGATCGGTTTTGCGATGGCACCACGGATCAATGCTGTCGGACGTCTTGGAGATGCCGACC
CCGCTGTGGATTTATTGATGTCTGAAAGCCTGGAAGAAGCGACGGAACTCGCCAATGAAATCAATGATATCAATAAAGAG
CGACAGGCTATGGTTGCAGAGATGGCGGAAGAAGCGATTTCTGAAGTTGAGGAAAACTTCCCGCCGGAGTCGAATGGTGT
GCTCATCATTGGCAGGGAAGGCTGGAACGCCGGTGTTGTGGGGATTGTGGCCTCTAAACTGGTTGAACGCTTTTACCGGC
CCACGATTGTATTGAGCTATGACCGGGAAAAGGGATACGCTAAAGGTTCTGCTCGGAGTATCGCCGGTTTCGATCTTTTT
GAAAGTCTGTCCACCTGCCGTGAATTACTGCCTCATTTTGGTGGCCATCCTATGGCTGCTGGAATGACATTGAAAATTGA
AGATGTTCAGGAGCTTAGGGACCGCATGAACTTGATTGCGAAGGAACAACTGAATGAAGAGGACTTCACACCCATTACAA
ATTTGGACGGTGCTACGACTTTAGCTGAAGTTTCCGTTCAAACGATTCAGGAGATGAGCCTGCTAGCGCCATTCGGGGTT
ACGAATCCTAAGCCGAAGATTTTGATAGATTCCGTACAACTTTCAAGCGCCCGTAAAATTGGTGCCAACCAAAATCACTT
GAAGGTCCAGCTGGAAGATGGTGAAAATCATAAACTTGATGGCGTAGGCTTCGGTCTCGGTCATTTTGTGGATGAATTAG
CGCCGCACGCTGAAGTCTCGGTGATTGGAGAGCTTTCCATCAATGAGTGGAATAATATGAAAAAGCCCCAGATCTTTGTC
CAGGATGTCTCGGTGAACCATTGGCAGTTATTCGATTACCGCGGCAAGGGCCAGGCAGAGAAGTGGCTTGCCGACATTCC
GGCACAAAACCGGAAAATCGTCATTTTCTCGGAAGATATTTATAGCAGATATCCCTTTTTACGAAACCATCCGGATCTTG
TTCATATCAAGAATGAACAGGATGCAGATCAGCTCGACTGCCTAGAAGGACATGTGGTTTTTATGGACATGCCACCGTTA
AGGGAATATTTGAAACGGGTCATTGCCAATAAGAATCCATCGCGTATCTACGCTCACCTTTCACATGAACAGGACCATTT
CTTAAGTACGATGCCAACAAGGGACCATTTTAAATGGTTTTACGCCTTCCTTGCCAAAAAGGGTCCGCTCGATGTGAAAA
GATATGGTGATGACCTTGCCAAATACCGCGGCTGGTCAAGGGATACCGTGGATTTCATTTCTAAGGTGTTTTTTGAGCTT
GATTTTGTTACAATAGAGAATGGGTTAATTATGCTTACAACCAATGCGAAAAAACGCGATCTCAGTGAATCTGAATCGTA
TATAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTAGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATC
ATTATTTAGTCCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)

RecJ OB domain (RecJ_OB)

(456-562)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(308-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.477

100

0.546

Multiple sequence alignment