Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACDZ29_RS00675 Genome accession   NZ_CP168135
Coordinates   120311..122026 (-) Length   571 a.a.
NCBI ID   WP_289315714.1    Uniprot ID   -
Organism   Peribacillus sp. RS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 115311..127026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ29_RS00655 (ACDZ29_00655) - 116039..116275 (+) 237 WP_101222519.1 DUF2627 domain-containing protein -
  ACDZ29_RS00660 (ACDZ29_00660) - 116317..117051 (-) 735 WP_375089490.1 glycerophosphodiester phosphodiesterase -
  ACDZ29_RS00665 (ACDZ29_00665) spo0A 117742..118533 (-) 792 WP_289325696.1 sporulation transcription factor Spo0A -
  ACDZ29_RS00670 (ACDZ29_00670) spoIVB 118856..120148 (-) 1293 WP_289325697.1 SpoIVB peptidase -
  ACDZ29_RS00675 (ACDZ29_00675) recN 120311..122026 (-) 1716 WP_289315714.1 DNA repair protein RecN Machinery gene
  ACDZ29_RS00680 (ACDZ29_00680) ahrC 122049..122498 (-) 450 WP_061144401.1 transcriptional regulator AhrC/ArgR -
  ACDZ29_RS00685 - 122533..122682 (-) 150 WP_375089494.1 hypothetical protein -
  ACDZ29_RS00690 (ACDZ29_00685) - 122815..123641 (-) 827 Protein_123 TlyA family RNA methyltransferase -
  ACDZ29_RS00695 (ACDZ29_00690) dxs 123646..125538 (-) 1893 WP_375091077.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACDZ29_RS00700 (ACDZ29_00695) - 125789..126682 (-) 894 WP_375089496.1 polyprenyl synthetase family protein -
  ACDZ29_RS00705 (ACDZ29_00700) - 126684..126917 (-) 234 WP_064463276.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64457.36 Da        Isoelectric Point: 5.1532

>NTDB_id=1042439 ACDZ29_RS00675 WP_289315714.1 120311..122026(-) (recN) [Peribacillus sp. RS7]
MLTELSIRNFAIIESLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGLDMNDGMAILRRDISQSGKSVCRVNGKLVTIAILREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKNSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAGIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQTFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=1042439 ACDZ29_RS00675 WP_289315714.1 120311..122026(-) (recN) [Peribacillus sp. RS7]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGAAAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACTGTCTT
GACCGGAGAAACAGGGGCAGGGAAATCAATCATTATAGATGCCGTTCATCTTTTGGTTGGGGGACGTGGTTCGGCAGAAT
TCATTCGGCATGGTGAGTCCAAGGCCGAAATAGAGGGATTATTTCAAATTGAAGATGAAAAACACCCGGTATTTGCCAAA
GCAGAAGAATTTGGACTGGATATGAATGATGGGATGGCCATTCTTCGAAGGGATATTTCACAGAGCGGCAAAAGCGTTTG
CAGAGTAAATGGAAAACTTGTAACGATTGCCATTTTACGCGAGATAGGAAGGACATTGATAGATATTCATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGACTCCATCTTCCTCTGCTGGATCAATTCGGCGGTGAAAAAATCGCCTCTGCACTC
ACGGAATACCAAAAGCTCTATAAACGTTATGAAACCGCTTCAAAACAATTGAATGGTTTGAGCCAAAATGAACAGCAAAT
GGTCCACCGTCTTGATTTGATCCAATTTCAATTCGATGAAATTCAAAAAGCTGATTTGAAACTACGTGAAGATGAAGAAT
TAATGGAAGAGCGAAAGAAAATTAATAATTTCGAAAAAATTCATGAAGCGCTGCAAACCAGTTATAATGCTTTAAATGGA
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAACCTGGAAGAAGCCGCAGGTCTTGATGAAGGTTTAAAAAA
CAGCTCCGAAACCGTTTCGAATAGTTACTTCCTGCTTGAAGAGGCCGTGTCAAACATCCGGGATCAATTAGACTCTTTGG
ACTATGATACAGAGCGTGTCGAATTCATTGAAAGCCGCCTTAATGAAATAAATCAATTAAAACGTAAATACGGGCGGACC
ATCGAGGAAATCCTGGAATATGGTGCAGGCATAGAAGAGGAAGTCGAAAAGCTGCAAAATAGGGAAACGCATATAGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCCGATTTAATTGTTGAAGCAAAGAATCTGTCTGAACTTCGTCAGACATTCG
CTCAGCAGTTAACCAAAAAGATCCATCAGGAATTAAAAGATTTATACATGGAAAAGACCATTTTTGAACCACATTTCCTT
CAAACGGCTTATACTTTCGATGAGTTGTCAGATAGGGGCATTAATCAGTCGGGGCTGGATTCGATGGAATTTTATATTTC
CACAAATCCAGGTGAACCGTTAAAACCTCTATCTAAAATCGCATCAGGTGGAGAACTCTCGAGGATCATGCTGGCTTTGA
AAAGCATTTTCTCCAAGCACCAAGGCATAACGTCCATTATATTTGATGAAGTGGACACCGGTGTGAGCGGACGGGTTGCA
CAATCCATCGCTGAAAAGATCTATAAAGTGGCAACGGGATCTCAAGTACTGTGTATATCCCATTTACCACAAGTGGCAGC
TATGGCGGATACTCACTTATTCATAGCGAAAAATGTAAGGGCCGGACGCACGAATACCTCGGTAAAGCCTTTAATTGAAA
CGGAAAAGATAAAAGAAATTGGCAGGATGATTTCTGGAGTCGAGATTACGGATTTGACGAAGCAGCATGCCAATGAATTA
ATCCAGCTGGCAAAAAGGTTGAAAATCACATCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.285

100

0.618

Multiple sequence alignment