Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AB9L17_RS25105 Genome accession   NZ_CP168124
Coordinates   4860192..4861307 (+) Length   371 a.a.
NCBI ID   WP_068985826.1    Uniprot ID   -
Organism   Bacillus sp. RS11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4855192..4866307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L17_RS25080 (AB9L17_25085) rnpA 4855877..4856221 (-) 345 WP_223553676.1 ribonuclease P protein component -
  AB9L17_RS25085 (AB9L17_25090) rpmH 4856323..4856457 (-) 135 WP_004233310.1 50S ribosomal protein L34 -
  AB9L17_RS25090 (AB9L17_25095) dnaA 4857141..4858490 (+) 1350 WP_068985823.1 chromosomal replication initiator protein DnaA -
  AB9L17_RS25095 (AB9L17_25100) dnaN 4858660..4859796 (+) 1137 WP_223553674.1 DNA polymerase III subunit beta -
  AB9L17_RS25100 (AB9L17_25105) yaaA 4859964..4860188 (+) 225 WP_068985825.1 S4 domain-containing protein YaaA -
  AB9L17_RS25105 (AB9L17_25110) recF 4860192..4861307 (+) 1116 WP_068985826.1 DNA replication/repair protein RecF Machinery gene
  AB9L17_RS25110 (AB9L17_25115) gyrB 4861400..4863334 (+) 1935 WP_223553673.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AB9L17_RS25115 (AB9L17_25120) gyrA 4863360..4865837 (+) 2478 WP_223553671.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 42698.72 Da        Isoelectric Point: 6.7558

>NTDB_id=1042437 AB9L17_RS25105 WP_068985826.1 4860192..4861307(+) (recF) [Bacillus sp. RS11]
MHIEQLKLTNYRNYDALALNFSPKINVFIGENAQGKTNVMESIYVLAMAKSHRTTNDKELIRWDSDYGKIEGAVQKRHGI
LPIELTITKKGKKGKINHIEQSRLSHYIGQMNVVMFAPEDLNVVKGSPQIRRRFIDMEIGQISPVYLHDLLTFQKILKQR
NHFLKMNQGKAMSDDVMYEVYNEQYIHAATQIIRKRFQFMDLLQEWAEPIHAGISQGKETLVIKYRTVAGIEKEHNSSEI
EGFLHKKLLEAKEREFDRGVTLVGPHRDDLQFLVNGYDVQTYGSQGQQRTTALSLKLAEIELIKQETNETPILLLDDVLS
ELDDYRQSHLLNTIQGEVQTFVTTTSVDGIHHETMEHAQLFHVKQGAIEES

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=1042437 AB9L17_RS25105 WP_068985826.1 4860192..4861307(+) (recF) [Bacillus sp. RS11]
ATGCATATAGAGCAATTAAAACTTACAAATTACCGTAACTATGATGCCTTAGCTTTAAACTTCTCTCCAAAAATTAATGT
TTTTATTGGTGAAAATGCTCAAGGAAAAACAAATGTTATGGAATCTATTTACGTATTAGCGATGGCTAAATCCCACCGCA
CGACGAACGATAAAGAATTAATACGTTGGGATTCAGACTATGGTAAAATAGAAGGGGCAGTTCAAAAAAGGCATGGTATT
TTACCGATTGAGCTTACGATTACGAAAAAAGGCAAAAAAGGTAAGATAAATCACATAGAACAGAGTCGCCTCAGTCATTA
TATTGGCCAAATGAATGTCGTGATGTTTGCACCCGAAGATTTAAACGTTGTAAAGGGAAGTCCGCAAATACGGCGACGTT
TTATTGATATGGAGATTGGGCAAATTTCTCCTGTCTATTTACATGATTTATTAACCTTTCAAAAAATTTTAAAACAACGT
AACCACTTTTTGAAAATGAATCAAGGTAAAGCAATGTCAGATGACGTGATGTACGAGGTTTATAATGAACAATATATTCA
CGCAGCTACCCAAATTATTCGAAAAAGATTTCAATTTATGGATTTATTGCAGGAGTGGGCAGAGCCAATTCACGCAGGTA
TTTCACAAGGGAAAGAAACGTTAGTTATTAAATACCGCACAGTAGCTGGTATCGAAAAAGAACATAATTCCAGTGAAATT
GAAGGCTTCTTGCATAAAAAACTACTTGAAGCTAAGGAGCGTGAATTTGATCGAGGTGTAACACTAGTTGGTCCACATCG
AGACGATTTGCAGTTTTTAGTAAATGGCTATGATGTTCAGACATACGGTTCGCAAGGACAGCAACGTACAACCGCTCTTT
CATTAAAACTTGCTGAAATTGAGTTAATTAAACAAGAAACAAATGAAACACCCATACTACTTTTAGATGATGTATTGTCG
GAACTCGACGATTATCGTCAATCGCATTTATTAAATACCATTCAAGGTGAAGTTCAAACTTTTGTAACGACTACAAGTGT
TGATGGAATTCATCATGAAACGATGGAGCATGCACAACTGTTTCACGTGAAACAAGGAGCGATTGAAGAAAGTTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

64.402

99.191

0.639

Multiple sequence alignment