Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AB9L17_RS22980 Genome accession   NZ_CP168124
Coordinates   4461451..4462401 (-) Length   316 a.a.
NCBI ID   WP_068984916.1    Uniprot ID   -
Organism   Bacillus sp. RS11     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4456451..4467401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L17_RS22955 (AB9L17_22960) - 4457416..4458066 (+) 651 WP_223553969.1 hypothetical protein -
  AB9L17_RS22960 (AB9L17_22965) - 4458355..4458669 (-) 315 WP_068984912.1 antibiotic biosynthesis monooxygenase -
  AB9L17_RS22965 (AB9L17_22970) - 4458671..4459681 (-) 1011 WP_375199826.1 siderophore ABC transporter substrate-binding protein -
  AB9L17_RS22970 (AB9L17_22975) - 4459747..4460508 (-) 762 WP_068984914.1 ABC transporter ATP-binding protein -
  AB9L17_RS22975 (AB9L17_22980) - 4460505..4461458 (-) 954 WP_068984915.1 iron chelate uptake ABC transporter family permease subunit -
  AB9L17_RS22980 (AB9L17_22985) ceuB 4461451..4462401 (-) 951 WP_068984916.1 ABC transporter permease Machinery gene
  AB9L17_RS22985 (AB9L17_22990) - 4462678..4463730 (-) 1053 WP_375199827.1 hypothetical protein -
  AB9L17_RS22990 (AB9L17_22995) - 4463770..4463934 (-) 165 WP_223553971.1 hypothetical protein -
  AB9L17_RS22995 (AB9L17_23000) - 4463961..4464101 (+) 141 WP_223553973.1 hypothetical protein -
  AB9L17_RS23000 (AB9L17_23005) menC 4464226..4465332 (-) 1107 WP_223553974.1 o-succinylbenzoate synthase -
  AB9L17_RS23005 (AB9L17_23010) - 4465355..4466179 (-) 825 WP_068984919.1 GNAT family N-acetyltransferase -
  AB9L17_RS23010 (AB9L17_23015) - 4466179..4467324 (-) 1146 WP_223553976.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34834.13 Da        Isoelectric Point: 9.9642

>NTDB_id=1042431 AB9L17_RS22980 WP_068984916.1 4461451..4462401(-) (ceuB) [Bacillus sp. RS11]
MKIRYLLTATVVLSIVSLFIGVVDIKPSDLLDFESEETRLFLISRIPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATKLGILISMMFFSNVTYFQKITFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSITTFFAYKADII
QNISAWLQGDFSLMMKGRYELLYISVPVLIIAYMYANRFTVAGMGEDFAKNLGLSYKFVMNLGLVLVALISTTVVLTVGV
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLICDIIGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1042431 AB9L17_RS22980 WP_068984916.1 4461451..4462401(-) (ceuB) [Bacillus sp. RS11]
ATGAAAATAAGATATCTTTTAACAGCAACTGTAGTGTTGTCAATTGTGTCACTATTTATCGGTGTAGTAGATATTAAACC
TAGCGACCTTTTAGACTTCGAATCAGAAGAAACTAGACTATTCTTAATTAGTCGTATACCGAGACTTGTAGCAATTTTGT
TAGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAGTTCGTGTCACCAACAACAGCA
GGTACTTTAGATGCTACTAAGTTGGGTATACTAATTTCGATGATGTTTTTCTCAAATGTCACATATTTTCAAAAAATTAC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTATTGTTTATGCAAATATTAAATCGAATAAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTTTGGGAATATCCTTTCGTCGATTACAACGTTCTTTGCGTATAAGGCGGATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATGATGAAAGGTCGTTATGAGCTTTTATACATAAGTGTACC
CGTGCTGATTATAGCTTACATGTATGCGAATCGCTTCACAGTGGCTGGAATGGGGGAGGATTTTGCAAAAAACCTTGGTC
TCTCCTATAAATTCGTTATGAATTTAGGTTTAGTGTTAGTAGCACTTATTTCAACGACAGTGGTACTTACTGTTGGCGTG
ATTCCATTCCTTGGTTTAATCATTCCCAATATAATTTCCTTGTTCAAAGGGGATAATCTCGCTAAGACATTGCCTCATAC
AGCGTTACTCGGGATGTCGTTCTTATTAATATGTGACATTATAGGGCGTGTACTGATTTTCCCTTATGAAATTCCAATTA
GTATGACGGTAGGCGTCATCGGAAGTGCGATCTTCCTATTTATGTTGTTTAGGGGGAAAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.114

100

0.541

Multiple sequence alignment