Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB9L17_RS10560 Genome accession   NZ_CP168124
Coordinates   2092304..2094130 (+) Length   608 a.a.
NCBI ID   WP_375200572.1    Uniprot ID   -
Organism   Bacillus sp. RS11     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2087304..2099130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L17_RS10535 (AB9L17_10535) - 2087337..2088050 (-) 714 WP_375200568.1 hypothetical protein -
  AB9L17_RS10540 (AB9L17_10540) - 2088264..2088485 (-) 222 WP_068985502.1 hypothetical protein -
  AB9L17_RS10545 (AB9L17_10545) - 2088797..2089372 (+) 576 WP_375200569.1 phosphoglycerate mutase family protein -
  AB9L17_RS10550 (AB9L17_10550) - 2090034..2090477 (+) 444 WP_375200570.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB9L17_RS10555 (AB9L17_10555) rcrP 2090548..2092311 (+) 1764 WP_375200571.1 ABC transporter ATP-binding protein Regulator
  AB9L17_RS10560 (AB9L17_10560) rcrQ 2092304..2094130 (+) 1827 WP_375200572.1 ABC transporter ATP-binding protein Regulator
  AB9L17_RS10565 (AB9L17_10565) - 2094563..2096746 (+) 2184 WP_375200573.1 helix-turn-helix domain-containing protein -
  AB9L17_RS10570 (AB9L17_10570) - 2097352..2097762 (+) 411 WP_068985497.1 thioesterase family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 67425.66 Da        Isoelectric Point: 8.3844

>NTDB_id=1042418 AB9L17_RS10560 WP_375200572.1 2092304..2094130(+) (rcrQ) [Bacillus sp. RS11]
MTNTQNKPRKGPGGPGHMMAPGEKPKNFKKPWGKLIAYCKPYLPAIIFALVLAVVGTIFTIIGPNKLSEITDLIMEGMAG
EIDITAIGKIGLFLAILYGLSFIFNYIQAFIMATITQRVSKRLRTDISNKIDRLPLKYFDSTTNGDVLSRVTNDVDMIGQ
SLNQSIGSLVSAAVMFFGSLIMMFYINVTMALSAIAATFIGFVFMTFIISKSRKYFVRQQQDLGRINGHIEEIYSGHSVM
KVYNGEKVAKQEFNEINESLFNSAWRAQFMSGMMMPLMIFIGNLGYVVVCVVGAALTVKGSITFGVIVSFMVYIRLFTQP
LSQLAQAATSLQSTAAASERVFEFLQEEELKDESDKKAILDAKDVKGNVKFENVKFGYTKEKLIIKDFSAQIKAGQKVAI
VGPTGAGKTTLVNLLMRFYEVDSGEILIEDVPTKSITRKNVHDLFCMVLQDTWLFEGTIKENIIYNKDHVTDEEVVAACK
AVGLHHFIRTLPKSYDTVLNDNTSLSVGQKQLITIARAMVKKAPLLILDEATSSVDTRTEALIQKAMDKLMVGRTSFVIA
HRLSTIKNADLILVMKDGDIIESGNHEELIAEKGFYADLYNSQFEDAS

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=1042418 AB9L17_RS10560 WP_375200572.1 2092304..2094130(+) (rcrQ) [Bacillus sp. RS11]
ATGACTAATACACAAAATAAGCCTCGAAAAGGTCCAGGTGGTCCAGGTCATATGATGGCTCCTGGAGAAAAGCCAAAGAA
TTTTAAAAAGCCTTGGGGGAAGTTGATTGCCTATTGTAAACCTTATTTGCCAGCGATTATCTTTGCACTTGTATTAGCAG
TTGTAGGAACAATTTTTACGATTATTGGACCCAATAAACTTAGTGAGATCACCGATTTGATAATGGAAGGCATGGCTGGT
GAGATTGATATTACGGCTATCGGAAAAATTGGTCTGTTCCTTGCTATTTTGTATGGGTTGAGTTTTATCTTCAATTATAT
TCAAGCGTTTATTATGGCTACGATTACGCAGAGAGTTTCCAAAAGATTACGGACAGATATCTCGAACAAAATCGATAGAT
TACCGTTGAAATACTTTGATTCTACAACCAACGGCGATGTGTTAAGCCGTGTCACGAATGATGTGGATATGATTGGACAG
TCTCTAAACCAAAGTATCGGTTCGTTAGTATCAGCGGCAGTAATGTTCTTTGGATCTTTGATAATGATGTTCTATATTAA
TGTTACGATGGCTCTTTCTGCCATTGCTGCAACTTTCATTGGATTTGTATTCATGACCTTTATTATATCCAAATCTCGCA
AGTACTTCGTTCGTCAGCAGCAAGACCTTGGTAGAATAAATGGCCATATTGAAGAAATCTATTCAGGGCATAGTGTTATG
AAAGTTTATAACGGTGAAAAAGTAGCCAAGCAAGAATTTAATGAAATCAATGAAAGTCTATTTAATAGCGCTTGGCGAGC
ACAGTTTATGTCGGGCATGATGATGCCTCTTATGATTTTTATTGGAAATTTAGGTTATGTTGTTGTTTGTGTAGTAGGTG
CCGCACTAACAGTGAAAGGTTCTATTACATTTGGTGTTATTGTTTCATTTATGGTTTATATCCGCTTATTTACGCAGCCG
TTGTCTCAGTTAGCACAGGCAGCAACAAGCTTGCAGTCAACAGCCGCAGCGAGCGAACGTGTATTTGAGTTCTTACAAGA
AGAGGAGCTTAAAGATGAAAGTGATAAGAAAGCCATTTTAGATGCTAAAGATGTTAAAGGTAATGTGAAATTTGAAAACG
TGAAGTTCGGATATACAAAAGAAAAACTTATTATTAAAGATTTCTCTGCACAGATAAAAGCTGGTCAAAAGGTGGCAATT
GTTGGGCCTACTGGAGCTGGGAAAACAACGCTTGTTAATCTTCTCATGCGTTTCTATGAAGTAGATAGTGGAGAAATCTT
GATTGAGGACGTACCGACTAAGTCGATTACTCGTAAAAATGTACACGATTTATTTTGCATGGTGCTGCAAGATACTTGGC
TATTCGAAGGTACCATTAAGGAAAATATCATTTATAACAAAGATCATGTAACCGACGAAGAAGTAGTTGCAGCTTGTAAG
GCGGTAGGTTTGCACCACTTTATTAGAACGTTGCCGAAAAGTTATGATACAGTATTAAACGATAATACAAGTTTATCTGT
CGGACAGAAACAGCTTATTACCATTGCAAGAGCTATGGTTAAAAAAGCACCGTTGCTTATTTTAGATGAGGCTACTAGTT
CCGTTGATACGCGTACAGAAGCACTTATTCAAAAAGCAATGGATAAATTGATGGTGGGCCGAACATCATTTGTCATTGCG
CATAGACTTTCAACAATTAAAAACGCCGATTTAATTTTAGTTATGAAAGACGGAGACATTATTGAAAGCGGTAATCATGA
AGAGCTGATTGCAGAAAAAGGATTCTATGCGGATCTATATAATAGTCAGTTTGAAGATGCTTCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(386-533)

ABC transporter transmembrane region (ABC_membrane)

(46-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.997

95.066

0.561

Multiple sequence alignment