Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB9L17_RS07900 Genome accession   NZ_CP168124
Coordinates   1601515..1602165 (-) Length   216 a.a.
NCBI ID   WP_068982761.1    Uniprot ID   -
Organism   Bacillus sp. RS11     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1596515..1607165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L17_RS07880 (AB9L17_07880) - 1596965..1597693 (+) 729 WP_068982765.1 DnaD domain-containing protein -
  AB9L17_RS07885 (AB9L17_07885) nth 1597707..1598369 (+) 663 WP_068982764.1 endonuclease III -
  AB9L17_RS07890 (AB9L17_07890) - 1598366..1598680 (+) 315 WP_068982763.1 YpoC family protein -
  AB9L17_RS07895 (AB9L17_07895) - 1598810..1601518 (-) 2709 WP_375200351.1 PBP1A family penicillin-binding protein -
  AB9L17_RS07900 (AB9L17_07900) recU 1601515..1602165 (-) 651 WP_068982761.1 Holliday junction resolvase RecU Machinery gene
  AB9L17_RS07905 (AB9L17_07905) - 1602593..1602787 (+) 195 WP_068982760.1 endonuclease -
  AB9L17_RS07910 (AB9L17_07910) - 1603109..1603462 (+) 354 WP_068982759.1 YppE family protein -
  AB9L17_RS07915 (AB9L17_07915) - 1603467..1605743 (+) 2277 WP_375200352.1 DEAD/DEAH box helicase -
  AB9L17_RS07920 (AB9L17_07920) - 1605749..1607005 (+) 1257 WP_068982757.1 ribonuclease H-like domain-containing protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25171.50 Da        Isoelectric Point: 6.8540

>NTDB_id=1042413 AB9L17_RS07900 WP_068982761.1 1601515..1602165(-) (recU) [Bacillus sp. RS11]
MTIRYPNGKLYSPNPAVQTTEKKKNDKDFSFSNRGKTLEDEINEANDYYVKRRLAIIHKKPVPVQIVKVEYPSRSAAVIR
EAYFRTPSTTDYNGVWNGHYIDFDAKETASKTSFPLKNIHLHQMTHMQQVTEQNGVAFIIVRFSAYERYFIVPYEVLQKA
WLAMENGERKSIPFSTIEEEAFEIPTSYHPRIDYLPIIQKLIEAQSHGFESEEIVE

Nucleotide


Download         Length: 651 bp        

>NTDB_id=1042413 AB9L17_RS07900 WP_068982761.1 1601515..1602165(-) (recU) [Bacillus sp. RS11]
GTGACAATTCGTTATCCGAATGGGAAATTGTATTCTCCTAATCCAGCTGTTCAAACAACAGAAAAAAAGAAGAACGATAA
GGATTTTTCTTTTAGTAATCGAGGAAAAACACTAGAGGATGAAATTAATGAAGCAAACGACTATTATGTAAAAAGGCGAC
TTGCTATCATTCATAAGAAACCTGTTCCCGTACAAATCGTCAAAGTAGAGTACCCATCACGAAGCGCTGCAGTTATTCGT
GAAGCTTATTTTCGAACGCCATCAACAACGGATTACAATGGCGTTTGGAACGGGCATTATATTGATTTTGATGCAAAGGA
AACTGCTTCAAAGACCAGTTTTCCCCTAAAGAATATTCATTTACATCAAATGACACATATGCAGCAAGTGACGGAACAAA
ATGGTGTGGCTTTTATCATCGTTCGTTTCTCAGCTTATGAACGATATTTTATTGTGCCATACGAAGTTTTACAAAAGGCC
TGGCTAGCGATGGAAAACGGTGAACGTAAATCGATACCCTTTTCAACGATTGAAGAGGAAGCTTTTGAAATTCCCACAAG
CTATCATCCACGTATCGATTATTTACCGATTATCCAAAAGCTCATTGAAGCACAAAGCCATGGTTTTGAAAGTGAGGAGA
TAGTAGAATGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(34-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.456

95.37

0.491

Multiple sequence alignment