Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AB9L17_RS00350 Genome accession   NZ_CP168124
Coordinates   54588..54872 (-) Length   94 a.a.
NCBI ID   WP_175401828.1    Uniprot ID   -
Organism   Bacillus sp. RS11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 49588..59872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L17_RS00320 (AB9L17_00320) holB 50115..51119 (+) 1005 WP_068986571.1 DNA polymerase III subunit delta' -
  AB9L17_RS00325 (AB9L17_00325) - 51112..51927 (+) 816 WP_068986572.1 stage 0 sporulation family protein -
  AB9L17_RS00330 (AB9L17_00330) yabA 51955..52311 (+) 357 WP_068986573.1 DNA replication initiation control protein YabA -
  AB9L17_RS00335 (AB9L17_00335) - 52375..53124 (+) 750 WP_068986574.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AB9L17_RS00340 (AB9L17_00340) - 53108..53371 (+) 264 WP_068986575.1 GIY-YIG nuclease family protein -
  AB9L17_RS00345 (AB9L17_00345) rsmI 53368..54240 (+) 873 WP_068986576.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AB9L17_RS00350 (AB9L17_00350) abrB 54588..54872 (-) 285 WP_175401828.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AB9L17_RS00355 (AB9L17_00355) metG 55329..57320 (+) 1992 WP_263297593.1 methionine--tRNA ligase -
  AB9L17_RS00360 (AB9L17_00360) - 57574..58344 (+) 771 WP_068986579.1 TatD family hydrolase -
  AB9L17_RS00365 (AB9L17_00365) - 58480..59691 (+) 1212 WP_068986580.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10519.48 Da        Isoelectric Point: 6.3419

>NTDB_id=1042399 AB9L17_RS00350 WP_175401828.1 54588..54872(-) (abrB) [Bacillus sp. RS11]
MIMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDDKIILKKYMPNMTCAVTGEVSDDNFRLVGGKLILSPEG
AEMLVKEIQTNLKK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1042399 AB9L17_RS00350 WP_175401828.1 54588..54872(-) (abrB) [Bacillus sp. RS11]
ATAATTATGAAATCAACAGGAATCGTTCGTAAAGTCGATGAATTAGGTCGTGTAGTAATTCCAATCGAACTACGTCGTAC
ATTAGGTATTGCAGAAAAAGACGCTTTAGAAATCTATGTGGATGATGACAAAATCATCTTAAAAAAATATATGCCTAACA
TGACATGTGCTGTAACTGGTGAAGTTTCTGATGATAACTTCCGTCTAGTTGGTGGCAAATTAATTTTAAGTCCTGAAGGC
GCAGAAATGTTAGTGAAAGAAATTCAAACTAACTTAAAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-51)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

82.796

98.936

0.819

Multiple sequence alignment