Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   QGS87_RS24050 Genome accession   NZ_OX460322
Coordinates   4757092..4758084 (-) Length   330 a.a.
NCBI ID   WP_000224455.1    Uniprot ID   -
Organism   Escherichia coli strain EC0880B isolate EC0880B_R3     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4752092..4763084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGS87_RS24040 yieP 4754984..4755676 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  QGS87_RS24045 mdtD 4755699..4757126 (+) 1428 WP_001280864.1 multidrug transporter subunit MdtD -
  QGS87_RS24050 cytR 4757092..4758084 (-) 993 WP_000224455.1 ribose operon transcriptional repressor RbsR Regulator
  QGS87_RS24055 rbsK 4758088..4759017 (-) 930 WP_001300603.1 ribokinase -
  QGS87_RS24060 rbsB 4759143..4760033 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  QGS87_RS24065 rbsC 4760058..4761023 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  QGS87_RS24070 rbsA 4761028..4762533 (-) 1506 WP_000387753.1 ribose ABC transporter ATP-binding protein RbsA -
  QGS87_RS24075 rbsD 4762541..4762960 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36570.85 Da        Isoelectric Point: 5.2141

>NTDB_id=1042397 QGS87_RS24050 WP_000224455.1 4757092..4758084(-) (cytR) [Escherichia coli strain EC0880B isolate EC0880B_R3]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAISAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=1042397 QGS87_RS24050 WP_000224455.1 4757092..4758084(-) (cytR) [Escherichia coli strain EC0880B isolate EC0880B_R3]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTTCCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.088

93.03

0.364