Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QGS87_RS18050 Genome accession   NZ_OX460322
Coordinates   3473973..3474578 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain EC0880B isolate EC0880B_R3     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3468973..3479578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGS87_RS18030 aes 3469010..3469969 (+) 960 WP_000801832.1 acetyl esterase -
  QGS87_RS18035 hemH 3469966..3470928 (-) 963 WP_001250088.1 ferrochelatase -
  QGS87_RS18040 adk 3471164..3471808 (-) 645 WP_001220233.1 adenylate kinase -
  QGS87_RS18045 htpG 3471989..3473863 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  QGS87_RS18050 recR 3473973..3474578 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QGS87_RS18055 ybaB 3474578..3474907 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QGS87_RS18060 dnaX 3474960..3476891 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  QGS87_RS18065 apt 3477020..3477571 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QGS87_RS18070 ybaN 3477724..3478101 (-) 378 WP_001188905.1 DUF454 family protein -
  QGS87_RS18075 priC 3478171..3478698 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  QGS87_RS18080 rsmS 3478712..3478873 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1042373 QGS87_RS18050 WP_001195025.1 3473973..3474578(-) (recR) [Escherichia coli strain EC0880B isolate EC0880B_R3]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1042373 QGS87_RS18050 WP_001195025.1 3473973..3474578(-) (recR) [Escherichia coli strain EC0880B isolate EC0880B_R3]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment