Detailed information NTG1042341

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QGS87_RS06175
• Genome accession: NZ_OX460322
• Coordinates: 1039652..1040644 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC0880B isolate EC0880B_R3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1034652..1045644

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QGS87_RS06145	ispD	1034713..1035423 (+)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QGS87_RS06150	ispF	1035423..1035902 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QGS87_RS06155	truD	1035899..1036948 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QGS87_RS06160	surE	1036929..1037690 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QGS87_RS06165	pcm	1037684..1038310 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QGS87_RS06170	nlpD	1038495..1039589 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QGS87_RS06175	rpoS	1039652..1040644 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QGS87_RS06180	-	1040765..1041172 (-)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
QGS87_RS06185	-	1041319..1041912 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QGS87_RS06190	-	1041912..1043339 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QGS87_RS06195	-	1043350..1043586 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QGS87_RS06200	ygbN	1043625..1044989 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1042341 QGS87_RS06175 WP_000081550.1 1039652..1040644(+) (rpoS) [Escherichia coli strain EC0880B isolate EC0880B_R3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1042341 QGS87_RS06175 WP_000081550.1 1039652..1040644(+) (rpoS) [Escherichia coli strain EC0880B isolate EC0880B_R3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715