Detailed information NTG1042264

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QGS93_RS05075
• Genome accession: NZ_OX460316
• Coordinates: 1065714..1066706 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC0026B isolate EC0026B_R4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1060714..1071706

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QGS93_RS05045	ispD	1060775..1061485 (+)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QGS93_RS05050	ispF	1061485..1061964 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QGS93_RS05055	truD	1061961..1063010 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QGS93_RS05060	surE	1062991..1063752 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QGS93_RS05065	pcm	1063746..1064372 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QGS93_RS05070	nlpD	1064557..1065651 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QGS93_RS05075	rpoS	1065714..1066706 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QGS93_RS05080	ygbN	1066800..1068164 (-)	1365	WP_000104459.1	GntP family transporter	-
QGS93_RS05085	ygbM	1068253..1069029 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
QGS93_RS05090	ygbL	1069034..1069672 (-)	639	WP_001278994.1	aldolase	-
QGS93_RS05095	otnK	1069669..1070931 (-)	1263	WP_000590386.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1042264 QGS93_RS05075 WP_000081550.1 1065714..1066706(+) (rpoS) [Escherichia coli strain EC0026B isolate EC0026B_R4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1042264 QGS93_RS05075 WP_000081550.1 1065714..1066706(+) (rpoS) [Escherichia coli strain EC0026B isolate EC0026B_R4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715