Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ACCK25_RS10225 Genome accession   NZ_CP168096
Coordinates   2059336..2060052 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain CUBIST-51     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2054336..2065052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCK25_RS10195 (ACCK25_10195) - 2055405..2055539 (-) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  ACCK25_RS10200 (ACCK25_10200) - 2055775..2056338 (+) 564 WP_001105696.1 accessory gene regulator AgrB -
  ACCK25_RS10205 (ACCK25_10205) agrD 2056341..2056484 (+) 144 WP_001094921.1 cyclic lactone autoinducer peptide AgrD -
  ACCK25_RS10210 (ACCK25_10210) - 2056514..2057593 (+) 1080 Protein_1943 GHKL domain-containing protein -
  ACCK25_RS10215 (ACCK25_10215) - 2057667..2058986 (+) 1320 WP_001557163.1 ISL3-like element IS1181 family transposase -
  ACCK25_RS10220 (ACCK25_10220) - 2059057..2059317 (+) 261 Protein_1945 GHKL domain-containing protein -
  ACCK25_RS10225 (ACCK25_10225) agrA 2059336..2060052 (+) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  ACCK25_RS10230 (ACCK25_10230) - 2060124..2060233 (+) 110 Protein_1947 hypothetical protein -
  ACCK25_RS10235 (ACCK25_10235) - 2060421..2061380 (-) 960 WP_001253312.1 carbohydrate kinase -
  ACCK25_RS10240 (ACCK25_10240) - 2061377..2062861 (-) 1485 WP_000141432.1 sucrose-6-phosphate hydrolase -
  ACCK25_RS10245 (ACCK25_10245) - 2063010..2063960 (-) 951 WP_000790331.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=1042150 ACCK25_RS10225 WP_000688492.1 2059336..2060052(+) (agrA) [Staphylococcus aureus strain CUBIST-51]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1042150 ACCK25_RS10225 WP_000688492.1 2059336..2060052(+) (agrA) [Staphylococcus aureus strain CUBIST-51]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment