Detailed information NTG0104210

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: ABWV92_RS00200
• Genome accession: NZ_AP028322
• Coordinates: 44337..45965 (-)
• Length: 542 a.a.
• NCBI ID: WP_145334218.1
• Uniprot ID: -
• Organism: Staphylococcus epidermidis strain KSE124-2
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	44358..47336	44337..45965	flank	-1607

Gene organization within MGE regions

Location: 44337..47336

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABWV92_RS00200 (KSE1242_00410)	ccrB	44337..45965 (-)	1629	WP_145334218.1	recombinase family protein	Machinery gene
ABWV92_RS00205 (KSE1242_00420)	ccrA	45987..47336 (-)	1350	WP_145334216.1	recombinase family protein	Machinery gene

Sequence

Protein

• Length: 542 a.a.
• Molecular weight: 62604.85 Da
• Isoelectric Point: 9.8653

>NTDB_id=104210 ABWV92_RS00200 WP_145334218.1 44337..45965(-) (ccrB) [Staphylococcus epidermidis strain KSE124-2]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRMLKDAKEGNIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYD
EVQIKLNNLIKTIEDNPDLTSVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGEILRHVFHNIEQMKKSQLK
ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDTPLDEVLLSTSSLFLPQPFYLTI

Nucleotide

• Length: 1629 bp

>NTDB_id=104210 ABWV92_RS00200 WP_145334218.1 44337..45965(-) (ccrB) [Staphylococcus epidermidis strain KSE124-2]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTGCGTGTTTCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGATGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAGGTCAAAGATATATACGCTGATCGTGGTA
TTTCAGGTAAATCTATGAACAGACCTGAGCTCCAACGTATGTTGAAAGATGCAAAAGAAGGCAATATAGATTGTGTTATG
GTCTACAAAACAAACCGATTAGCTCGTAATACATCGGATCTTCTGAAAATCGTCGAAGATTTGCATAAACAAAATGTCGA
ATTTTTCAGTCTATCAGAACGTATGGAAGTCAATACTTCATCGGGTAAGCTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTTATGGGGCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGTAAC
TTGCCGCTAGGCTATGACAAAATACCTAATAGTAAACATGAACTGATGATTAATCAACATGAAGCTAATATTGTAAAATA
TATATTCGAATCCTATGCCAAAGGACATGGCTATCGTAAAATAGCCAATGCATTGAATCACAAAGGCTATGTCACTAAAA
AGGGTAAACCTTTTAGTATTAGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCAAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTTAATGATAAACCAGTGATAGCTGAAGGGAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTACAAATGCGTAAAAAACAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACGA
ATCTGCTTACAGGCATTATTCACTGTCCACAATGTGGCGCACCTATGGCAGCAAGCAATACAACGAATACACTTAAAGAT
GGAACCAAGAAACGCATACGTTACTATTCATGTAGTAATTTTCGCAACAAGGGGTCCAAAGTATGTTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATACTCGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTTG
TAGCACGTGTTAATCAAGAAAATCAAGTTGATTGTGCGTCACTTCATCACGATATCGCTTATAAGCAACAACAATATGAT
GAAGTACAAATCAAACTAAATAATCTGATTAAAACCATCGAGGATAATCCGGACTTAACATCAGTAATCAGGCCGTCGAT
TCAAAAATATGATAAGCAACTTAATGACATTATGAGTCAAATCAATCAACTCAAAAAACAACAAAATGAAGATAAACCCT
CATATAATGCCAAAAAAATTGGTGAAATATTGCGACACGTCTTTCATAATATTGAGCAAATGAAAAAATCTCAACTTAAA
GCACTGTACTTAGCAGTGATTGATCGCATTGATATTAGAAAAGATAGCAATCACAAAAAACAGTTTTATGTAACACTCAA
ACTTGATAATGAAGTAATTAAACAGGTTTTCAATGATACTCCTCTCGACGAAGTGCTCCTTAGCACTTCGTCTTTATTTT
TACCCCAACCTTTTTATTTAACAATATAA

Domains

Predicted by InterproScan.

• Ogr/Delta-like zinc finger (Ogr_Delta) (301-356)

• Recombinase (Recombinase) (180-280)

• Resolvase, N terminal domain (Resolvase) (11-156)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	93.173	100	0.932