Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   P9C33_RS17640 Genome accession   NZ_OX442407
Coordinates   3612113..3612718 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate pure strain     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3607113..3617718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9C33_RS17620 aes 3607254..3608213 (+) 960 WP_000801838.1 acetyl esterase -
  P9C33_RS17625 hemH 3608210..3609172 (-) 963 WP_001250120.1 ferrochelatase -
  P9C33_RS17630 adk 3609304..3609948 (-) 645 WP_001345715.1 adenylate kinase -
  P9C33_RS17635 htpG 3610129..3612003 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  P9C33_RS17640 recR 3612113..3612718 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  P9C33_RS17645 ybaB 3612718..3613047 (-) 330 WP_001442196.1 YbaB/EbfC family nucleoid-associated protein -
  P9C33_RS17650 dnaX 3613100..3615031 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  P9C33_RS17655 apt 3615160..3615711 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  P9C33_RS17660 ybaN 3615864..3616241 (-) 378 WP_001188905.1 DUF454 family protein -
  P9C33_RS17665 priC 3616311..3616838 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  P9C33_RS17670 rsmS 3616852..3617013 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1042089 P9C33_RS17640 WP_001195025.1 3612113..3612718(-) (recR) [Escherichia coli isolate pure strain]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1042089 P9C33_RS17640 WP_001195025.1 3612113..3612718(-) (recR) [Escherichia coli isolate pure strain]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443