Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QOR53_RS03105 Genome accession   NZ_OX437061
Coordinates   596320..596703 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 591320..601703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR53_RS03085 - 591399..593333 (-) 1935 WP_002890708.1 ribonuclease R family protein -
  QOR53_RS03090 ilvC 593452..594474 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  QOR53_RS03095 - 594478..595560 (+) 1083 WP_002864866.1 divergent polysaccharide deacetylase family protein -
  QOR53_RS03100 dprA 595550..596323 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  QOR53_RS03105 dprB 596320..596703 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  QOR53_RS03110 - 596732..597571 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  QOR53_RS03115 msrA 597747..598244 (-) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  QOR53_RS03120 ppa 598285..598803 (-) 519 WP_002867724.1 inorganic diphosphatase -
  QOR53_RS03125 adk 598813..599391 (-) 579 WP_002859580.1 adenylate kinase -
  QOR53_RS03130 aspS 599388..601139 (-) 1752 WP_052787826.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=1041998 QOR53_RS03105 WP_002858579.1 596320..596703(+) (dprB) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=1041998 QOR53_RS03105 WP_002858579.1 596320..596703(+) (dprB) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449