Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACDX17_RS16830 Genome accession   NZ_CP168069
Coordinates   3384737..3385333 (-) Length   198 a.a.
NCBI ID   WP_116288237.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain UHD-2018     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3379737..3390333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDX17_RS16815 (ACDX17_16815) helD 3379945..3381999 (-) 2055 WP_032414747.1 DNA helicase IV -
  ACDX17_RS16820 (ACDX17_16820) - 3382124..3382570 (+) 447 WP_002898425.1 YccF domain-containing protein -
  ACDX17_RS16825 (ACDX17_16825) yccS 3382588..3384723 (+) 2136 WP_032414745.1 YccS family putative transporter -
  ACDX17_RS16830 (ACDX17_16830) sxy/tfoX 3384737..3385333 (-) 597 WP_116288237.1 TfoX/Sxy family DNA transformation protein Regulator
  ACDX17_RS16835 (ACDX17_16835) sulA 3385682..3386191 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ACDX17_RS16840 (ACDX17_16840) ompA 3386544..3387614 (+) 1071 WP_002898408.1 porin OmpA -
  ACDX17_RS16845 (ACDX17_16845) matP 3387746..3388198 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACDX17_RS16850 (ACDX17_16850) - 3388384..3390141 (+) 1758 WP_032414743.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22606.18 Da        Isoelectric Point: 10.1298

>NTDB_id=1041890 ACDX17_RS16830 WP_116288237.1 3384737..3385333(-) (sxy/tfoX) [Klebsiella pneumoniae strain UHD-2018]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
TSLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1041890 ACDX17_RS16830 WP_116288237.1 3384737..3385333(-) (sxy/tfoX) [Klebsiella pneumoniae strain UHD-2018]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
ACTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment