Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   KJP56_RS09540 Genome accession   NZ_OX419652
Coordinates   1835306..1835737 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis isolate NRS6131     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1830306..1840737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP56_RS09520 (NRS6131_09490) spoVS 1830868..1831128 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  KJP56_RS09525 (NRS6131_09495) tdh 1831393..1832436 (+) 1044 WP_049140039.1 L-threonine 3-dehydrogenase -
  KJP56_RS09530 (NRS6131_09500) kbl 1832449..1833627 (+) 1179 WP_213419596.1 glycine C-acetyltransferase -
  KJP56_RS09535 (NRS6131_09505) miaB 1833775..1835304 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  KJP56_RS09540 (NRS6131_09510) ymcA 1835306..1835737 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  KJP56_RS09545 (NRS6131_09515) cotE 1835999..1836544 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  KJP56_RS09550 (NRS6131_09520) hexA 1836677..1839253 (+) 2577 WP_213419597.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=1041673 KJP56_RS09540 WP_003231834.1 1835306..1835737(+) (ymcA) [Bacillus subtilis isolate NRS6131]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1041673 KJP56_RS09540 WP_003231834.1 1835306..1835737(+) (ymcA) [Bacillus subtilis isolate NRS6131]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTTCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1