Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CF59_RS17615 Genome accession   NZ_CP007393
Coordinates   3652211..3652726 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain ST2747     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3647211..3657726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF59_RS17590 (CF59_22640) ygaZ 3647610..3648347 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  CF59_RS17595 (CF59_22645) ygaH 3648337..3648672 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  CF59_RS17600 (CF59_22650) emrR 3648763..3649293 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CF59_RS17605 (CF59_22660) emrA 3649420..3650592 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CF59_RS17610 (CF59_22665) emrB 3650609..3652147 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CF59_RS17615 (CF59_22670) luxS 3652211..3652726 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CF59_RS17620 (CF59_22680) gshA 3652876..3654432 (-) 1557 WP_000611781.1 glutamate--cysteine ligase -
  CF59_RS17625 (CF59_22685) yqaA 3654505..3654933 (-) 429 WP_001287454.1 YqaA family protein -
  CF59_RS17630 (CF59_22690) yqaB 3654930..3655496 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CF59_RS17665 (CF59_22745) csrA 3656815..3657000 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=104151 CF59_RS17615 WP_001130211.1 3652211..3652726(-) (luxS) [Escherichia coli strain ST2747]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=104151 CF59_RS17615 WP_001130211.1 3652211..3652726(-) (luxS) [Escherichia coli strain ST2747]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment