Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACDZ78_RS18580 Genome accession   NZ_CP168026
Coordinates   3707861..3708550 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain EM5 isolate     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3702861..3713550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ78_RS18545 (ACDZ78_18545) - 3703059..3703541 (-) 483 WP_053574009.1 flagellar protein FlgN -
  ACDZ78_RS18550 (ACDZ78_18550) flgM 3703556..3703822 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACDZ78_RS18555 (ACDZ78_18555) - 3703892..3704311 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  ACDZ78_RS18560 (ACDZ78_18560) comFC 3704385..3705074 (-) 690 WP_199910801.1 phosphoribosyltransferase family protein Machinery gene
  ACDZ78_RS18565 (ACDZ78_18565) - 3705080..3705364 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACDZ78_RS18570 (ACDZ78_18570) comFA 3705422..3706807 (-) 1386 WP_053574011.1 DEAD/DEAH box helicase Machinery gene
  ACDZ78_RS18575 (ACDZ78_18575) - 3706915..3707763 (-) 849 WP_053574012.1 DegV family protein -
  ACDZ78_RS18580 (ACDZ78_18580) degU 3707861..3708550 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACDZ78_RS18585 (ACDZ78_18585) degS 3708627..3709790 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACDZ78_RS18590 (ACDZ78_18590) - 3710013..3710660 (+) 648 WP_003151384.1 YigZ family protein -
  ACDZ78_RS18595 (ACDZ78_18595) - 3710665..3711879 (+) 1215 WP_015418337.1 LCP family protein -
  ACDZ78_RS18600 (ACDZ78_18600) - 3711978..3713054 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1041503 ACDZ78_RS18580 WP_003219701.1 3707861..3708550(-) (degU) [Bacillus velezensis strain EM5 isolate]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1041503 ACDZ78_RS18580 WP_003219701.1 3707861..3708550(-) (degU) [Bacillus velezensis strain EM5 isolate]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCTATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment