Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   KJP43_RS12455 Genome accession   NZ_OX419579
Coordinates   2399734..2401224 (-) Length   496 a.a.
NCBI ID   WP_029726757.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2394734..2406224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP43_RS12425 (NRS6103_12320) gudB 2394883..2396157 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  KJP43_RS12430 (NRS6103_12325) mecB 2396312..2396896 (-) 585 WP_003230533.1 genetic competence negative regulator -
  KJP43_RS12435 (NRS6103_12330) ypbG 2397055..2397834 (-) 780 WP_029726758.1 metallophosphoesterase -
  KJP43_RS12440 (NRS6103_12335) ypbF 2397920..2398363 (-) 444 WP_014480147.1 YpbF family protein -
  KJP43_RS12445 (NRS6103_12340) ypbE 2398426..2399154 (-) 729 WP_015251801.1 LysM peptidoglycan-binding domain-containing protein -
  KJP43_RS12450 (NRS6103_12345) ypbD 2399105..2399707 (-) 603 WP_003230529.1 CPBP family intramembrane glutamic endopeptidase -
  KJP43_RS12455 (NRS6103_12350) recS 2399734..2401224 (-) 1491 WP_029726757.1 ATP-dependent DNA helicase RecQ Machinery gene
  KJP43_RS12460 (NRS6103_12355) gmmB 2401217..2402275 (-) 1059 WP_029726756.1 helix-turn-helix domain-containing protein -
  KJP43_RS12465 (NRS6103_12360) fer 2402541..2402789 (+) 249 WP_003225461.1 ferredoxin -
  KJP43_RS12470 (NRS6103_12365) fmnP 2402829..2403401 (-) 573 WP_029726755.1 riboflavin transporter FmnP -
  KJP43_RS12475 (NRS6103_12370) serA 2403898..2405475 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56480.99 Da        Isoelectric Point: 6.3464

>NTDB_id=1041372 KJP43_RS12455 WP_029726757.1 2399734..2401224(-) (recS) [Bacillus subtilis isolate NRS6103]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKAQG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1041372 KJP43_RS12455 WP_029726757.1 2399734..2401224(-) (recS) [Bacillus subtilis isolate NRS6103]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCAGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996