Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACDJ58_RS29320 Genome accession   NZ_CP168020
Coordinates   6457060..6458013 (+) Length   317 a.a.
NCBI ID   WP_413374232.1    Uniprot ID   -
Organism   Paenibacillus taichungensis strain Cl17b     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6452060..6463013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDJ58_RS29290 (ACDJ58_29285) - 6452075..6453538 (+) 1464 WP_413374226.1 catalase -
  ACDJ58_RS29295 (ACDJ58_29290) - 6453779..6454195 (+) 417 WP_076287498.1 BlaI/MecI/CopY family transcriptional regulator -
  ACDJ58_RS29300 (ACDJ58_29295) - 6454197..6455057 (+) 861 WP_413374227.1 M56 family metallopeptidase -
  ACDJ58_RS29305 (ACDJ58_29300) - 6455098..6455508 (+) 411 WP_413374228.1 DoxX family protein -
  ACDJ58_RS29310 (ACDJ58_29305) - 6455733..6456434 (+) 702 WP_413374230.1 pirin family protein -
  ACDJ58_RS29315 (ACDJ58_29310) - 6456483..6456818 (+) 336 WP_413374231.1 hypothetical protein -
  ACDJ58_RS29320 (ACDJ58_29315) ceuB 6457060..6458013 (+) 954 WP_413374232.1 ABC transporter permease Machinery gene
  ACDJ58_RS29325 (ACDJ58_29320) - 6458010..6458978 (+) 969 WP_413374233.1 iron chelate uptake ABC transporter family permease subunit -
  ACDJ58_RS29330 (ACDJ58_29325) - 6458972..6459730 (+) 759 WP_063567230.1 ABC transporter ATP-binding protein -
  ACDJ58_RS29335 (ACDJ58_29330) - 6459772..6460758 (+) 987 WP_413374234.1 siderophore ABC transporter substrate-binding protein -
  ACDJ58_RS29340 (ACDJ58_29335) - 6461061..6462521 (+) 1461 WP_413379881.1 spore germination protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35065.24 Da        Isoelectric Point: 9.8858

>NTDB_id=1041354 ACDJ58_RS29320 WP_413374232.1 6457060..6458013(+) (ceuB) [Paenibacillus taichungensis strain Cl17b]
MKLGYMLIVLAFLSIVYLFIGNSDISPMDIFHLTPVQLQVLQVSRFPRLISILVAGISMSVIGLIMQQLTRNRFVSPTTA
GTMDSARLGILVTLMWFPGASSLQKMLVAFAFALAGTLIFMRILEKVKFKDTIYIALLGLMFGNIVSSITTFFAYKNDLI
QNMSSWLQGDFSTIMKGRYELIYISIPLLIIVYLFANRFTLAGMGEDFSTNLGLAYRKVVNLGLILVAMVSAVVIITVGT
IPFLGLVVPNIVTLYKGDNLRDTLPHTAVLGAIFVLVCDILGQLIIYPYQLSISLTVGVVGSVLFLYLLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1041354 ACDJ58_RS29320 WP_413374232.1 6457060..6458013(+) (ceuB) [Paenibacillus taichungensis strain Cl17b]
ATGAAGTTAGGCTATATGTTGATCGTACTGGCTTTTTTGTCTATCGTATACCTGTTTATTGGCAATTCAGACATTTCACC
CATGGATATATTTCATTTGACCCCAGTCCAGCTTCAGGTGTTACAAGTCAGTCGTTTTCCCCGTCTAATCAGCATCCTTG
TCGCAGGTATCAGTATGAGTGTCATTGGACTGATCATGCAGCAGCTGACACGCAACCGTTTTGTTTCTCCGACAACGGCC
GGAACAATGGACTCAGCCCGATTGGGTATCCTTGTTACTTTGATGTGGTTCCCTGGTGCTTCTTCACTGCAAAAAATGCT
GGTCGCTTTTGCCTTCGCACTGGCTGGAACGCTAATCTTTATGCGGATACTGGAGAAAGTCAAATTCAAGGATACGATAT
ACATCGCTCTCCTTGGTTTGATGTTTGGCAATATTGTAAGCTCAATCACGACTTTTTTTGCTTACAAGAACGATTTAATC
CAGAACATGTCGTCCTGGTTGCAAGGTGACTTCTCCACGATTATGAAGGGACGCTATGAACTGATCTATATTAGTATTCC
GTTGCTCATTATCGTATATCTGTTCGCTAATCGCTTTACACTTGCGGGTATGGGGGAAGATTTCTCAACTAACCTTGGAC
TGGCTTATCGAAAGGTGGTTAATCTCGGACTGATTCTGGTTGCCATGGTTTCAGCCGTCGTTATTATTACCGTAGGTACA
ATTCCTTTTCTGGGTCTTGTAGTACCGAATATTGTGACATTGTATAAGGGTGACAACTTGCGGGATACATTGCCTCATAC
GGCAGTACTCGGTGCGATTTTTGTTCTGGTCTGCGATATTTTGGGCCAATTGATTATTTATCCTTATCAGCTCTCCATCA
GTTTGACTGTGGGAGTTGTAGGTAGCGTGCTGTTTCTGTATTTATTGCTTCGAAGAAAGGCTTATGAATCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.266

99.685

0.511

Multiple sequence alignment