Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R8629_RS06165 Genome accession   NZ_AP028249
Coordinates   1329627..1331003 (-) Length   458 a.a.
NCBI ID   WP_004845356.1    Uniprot ID   R5QDR2
Organism   [Ruminococcus] torques strain 17EGH124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1324627..1336003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8629_RS06145 (Rumi2_12740) - 1325797..1326969 (-) 1173 WP_004845360.1 iron-containing alcohol dehydrogenase -
  R8629_RS06150 (Rumi2_12750) - 1327041..1328198 (-) 1158 WP_009243166.1 glycosyl hydrolase family 18 protein -
  R8629_RS06155 (Rumi2_12760) - 1328245..1329123 (-) 879 WP_009319905.1 YihY/virulence factor BrkB family protein -
  R8629_RS06165 (Rumi2_12770) radA 1329627..1331003 (-) 1377 WP_004845356.1 DNA repair protein RadA Machinery gene
  R8629_RS06170 (Rumi2_12780) - 1331177..1331590 (-) 414 WP_009243168.1 hypothetical protein -
  R8629_RS06175 (Rumi2_12800) - 1331713..1334158 (-) 2446 Protein_1216 ATP-dependent Clp protease ATP-binding subunit -
  R8629_RS06180 (Rumi2_12810) - 1334205..1334573 (-) 369 WP_004845353.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49833.82 Da        Isoelectric Point: 7.1305

>NTDB_id=104129 R8629_RS06165 WP_004845356.1 1329627..1331003(-) (radA) [[Ruminococcus] torques strain 17EGH124]
MAKGKKSVFFCQNCGHEEAKWLGQCPGCGEWNTFVEEKIGSGVTKGSTQGAKAVRELVREAKVIPLNDVTAEDDVRCATG
IKELDRVLGGGIVPGSLVLVGGDPGIGKSTLLLQVCRILADKKKVLYISGEESQTQIKLRANRMGNFADGLFLLCETNLE
IIRGILEKERPELVVIDSIQTMYSEEVSSAPGSVSQVRESTNVFMQLAKGLCIPIFIVGHVTKEGTVAGPRVLEHMVDTV
LYFEGDRHASYRILRAVKNRFGSTNEIGVFEMRQSGLEEVENPSEYMLSGRPEQSAGSVVACSMEGTRPILIEIQALVCR
SNFGMPRRTAAGTDYNRVNLLMAVLEKRLGMALSNSDAYVNIAGGIRMNEPAIDLGIVMALVSSYRNRPVDEKTIVFGEV
GLSGEVRAVNMPEQRVAEAKKLGFETCILPQVCMKMVKDIKGIRLIGVKSVNEAVGMI

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=104129 R8629_RS06165 WP_004845356.1 1329627..1331003(-) (radA) [[Ruminococcus] torques strain 17EGH124]
ATGGCAAAAGGAAAGAAAAGTGTGTTTTTCTGTCAGAATTGCGGGCATGAAGAGGCAAAATGGCTCGGTCAGTGTCCGGG
ATGCGGGGAGTGGAATACATTTGTAGAGGAAAAGATCGGCAGCGGTGTGACGAAAGGCAGTACACAGGGAGCAAAAGCTG
TTCGCGAGCTTGTCAGAGAAGCGAAAGTGATCCCGCTTAACGATGTAACGGCTGAAGATGACGTGCGGTGCGCTACAGGC
ATCAAAGAATTAGACCGCGTGCTCGGAGGAGGGATCGTTCCGGGATCGCTTGTGCTTGTCGGCGGCGATCCCGGTATCGG
AAAGTCTACTTTGCTGCTTCAAGTGTGCAGGATTCTGGCCGATAAAAAGAAAGTTTTATACATTTCGGGAGAAGAATCGC
AGACGCAGATCAAACTAAGGGCAAACCGTATGGGAAACTTTGCGGACGGATTGTTTCTTTTATGTGAGACGAATCTGGAG
ATCATAAGAGGAATTCTTGAAAAAGAGCGTCCCGAACTTGTTGTCATTGACTCTATTCAGACGATGTACAGCGAAGAAGT
TTCATCCGCTCCCGGAAGTGTGTCGCAAGTAAGAGAATCGACGAATGTATTTATGCAGCTTGCAAAAGGATTATGTATTC
CGATTTTCATTGTCGGACATGTGACGAAAGAAGGAACGGTAGCAGGTCCGCGTGTCTTGGAACATATGGTTGATACAGTG
CTTTATTTTGAAGGAGACAGACACGCTTCTTACAGAATTTTACGCGCTGTGAAGAATCGTTTCGGATCGACGAATGAGAT
CGGCGTGTTTGAGATGCGGCAGAGCGGACTTGAGGAAGTGGAAAATCCTTCGGAATATATGTTGAGCGGCAGACCGGAAC
AGTCTGCGGGATCGGTCGTTGCATGTTCTATGGAAGGAACTCGGCCTATTTTGATCGAGATACAGGCGCTTGTATGCAGG
AGTAATTTCGGGATGCCGAGGCGTACGGCTGCCGGAACGGATTATAACAGAGTGAATCTTCTTATGGCAGTGTTGGAAAA
ACGTCTCGGAATGGCGCTGTCTAATTCGGATGCGTATGTCAATATCGCCGGAGGAATCAGAATGAACGAGCCGGCGATCG
ATCTTGGTATTGTTATGGCGCTTGTTTCAAGTTACAGAAACCGCCCGGTTGATGAAAAGACGATCGTGTTCGGGGAAGTC
GGACTAAGCGGAGAAGTCCGCGCGGTCAATATGCCCGAACAAAGAGTCGCAGAGGCGAAAAAGCTGGGATTCGAGACGTG
TATTCTTCCGCAGGTGTGCATGAAAATGGTAAAAGATATCAAAGGAATTCGACTCATCGGGGTAAAAAGCGTAAACGAGG
CGGTCGGGATGATATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-36)

Subunit ChlI of Mg-chelatase (ChlI)

(349-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R5QDR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

56.36

99.563

0.561
  radA Streptococcus mitis NCTC 12261

53.829

99.782

0.537
  radA Streptococcus pneumoniae Rx1

53.829

99.782

0.537
  radA Streptococcus pneumoniae D39

53.829

99.782

0.537
  radA Streptococcus pneumoniae R6

53.829

99.782

0.537
  radA Streptococcus pneumoniae TIGR4

53.829

99.782

0.537
  radA Streptococcus mitis SK321

53.611

99.782

0.535

Multiple sequence alignment