Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   KJP45_RS06645 Genome accession   NZ_OX419578
Coordinates   1275511..1276647 (+) Length   378 a.a.
NCBI ID   WP_213414428.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6128     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1270511..1281647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP45_RS06625 (NRS6128_06570) uxaA 1270960..1272453 (+) 1494 WP_213414427.1 altronate dehydratase family protein -
  KJP45_RS06630 (NRS6128_06575) yjnA 1272492..1273256 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  KJP45_RS06635 (NRS6128_06580) yjoA 1273481..1273945 (-) 465 WP_014479541.1 DinB family protein -
  KJP45_RS06640 (NRS6128_06585) yjoB 1274094..1275365 (+) 1272 WP_003245490.1 ATPase YjoB -
  KJP45_RS06645 (NRS6128_06590) rapC 1275511..1276647 (+) 1137 WP_213414428.1 tetratricopeptide repeat protein Regulator
  KJP45_RS06650 (NRS6128_06595) phrA 1276637..1276771 (+) 135 WP_106073840.1 phosphatase RapA inhibitor PhrA -
  KJP45_RS06655 (NRS6128_06600) yjpA 1276802..1277059 (-) 258 WP_003232731.1 YciI family protein -
  KJP45_RS06660 (NRS6128_06605) xlyB 1277180..1278133 (+) 954 WP_128747067.1 N-acetylmuramoyl-L-alanine amidase -
  KJP45_RS06665 (NRS6128_06610) yjqA 1278173..1278550 (-) 378 WP_014476529.1 PH domain-containing protein -
  KJP45_RS06670 (NRS6128_06615) pghB 1278655..1279257 (+) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  KJP45_RS06675 (NRS6128_06620) xpdC 1279334..1280170 (+) 837 WP_131227335.1 manganese catalase family protein -
  KJP45_RS06680 (NRS6128_06625) xkdA 1280214..1280810 (-) 597 WP_213414429.1 ImmA/IrrE family metallo-endopeptidase -
  KJP45_RS06685 (NRS6128_06630) xre 1280973..1281314 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45118.29 Da        Isoelectric Point: 4.6857

>NTDB_id=1041191 KJP45_RS06645 WP_213414428.1 1275511..1276647(+) (rapC) [Bacillus subtilis isolate NRS6128]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFEEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=1041191 KJP45_RS06645 WP_213414428.1 1275511..1276647(+) (rapC) [Bacillus subtilis isolate NRS6128]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGAAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCTTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

45.213

99.471

0.45
  rapF Bacillus subtilis subsp. subtilis str. 168

41.953

100

0.421