Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   KJP47_RS03835 Genome accession   NZ_OX419577
Coordinates   750385..751515 (+) Length   376 a.a.
NCBI ID   WP_014479091.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6120     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 745385..756515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP47_RS03810 (NRS6120_04060) - 745736..746041 (-) 306 WP_213382938.1 hypothetical protein -
  KJP47_RS03815 (NRS6120_04065) yezA 746108..746314 (-) 207 WP_213382940.1 bacteriocin immunity protein -
  KJP47_RS03820 (NRS6120_04075) yezG 746555..747010 (-) 456 WP_213383044.1 TIGR01741 family protein -
  KJP47_RS03825 (NRS6120_04080) yeeF 747030..749039 (-) 2010 WP_213382941.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  KJP47_RS03830 (NRS6120_04085) - 749219..750241 (+) 1023 WP_213382943.1 hypothetical protein -
  KJP47_RS03835 (NRS6120_04090) rapC 750385..751515 (+) 1131 WP_014479091.1 response regulator aspartate phosphatase RapH Regulator
  KJP47_RS03840 (NRS6120_04095) phrH 751505..751678 (+) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  KJP47_RS03845 (NRS6120_04100) yeeI 751838..752557 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  KJP47_RS03850 (NRS6120_04105) - 752691..753182 (+) 492 WP_213382951.1 spore coat protein -
  KJP47_RS03855 (NRS6120_04110) yezE 753296..753880 (+) 585 WP_014479093.1 TetR/AcrR family transcriptional regulator -
  KJP47_RS03860 (NRS6120_04115) cotJA 754057..754305 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  KJP47_RS03865 (NRS6120_04120) cotJB 754289..754552 (+) 264 WP_003219491.1 spore coat protein CotJB -
  KJP47_RS03870 (NRS6120_04125) cotJC 754567..755136 (+) 570 WP_003233850.1 spore coat protein CotJC -
  KJP47_RS03875 (NRS6120_04130) yesJ 755261..755803 (+) 543 WP_213382959.1 GNAT family N-acetyltransferase -
  KJP47_RS03880 (NRS6120_04135) yesK 755826..756129 (+) 304 Protein_712 YesK-like family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44030.39 Da        Isoelectric Point: 5.9937

>NTDB_id=1041018 KJP47_RS03835 WP_014479091.1 750385..751515(+) (rapC) [Bacillus subtilis isolate NRS6120]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQKMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1041018 KJP47_RS03835 WP_014479091.1 750385..751515(+) (rapC) [Bacillus subtilis isolate NRS6120]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGAAGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAGCCTTACGGAAATCGTCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCTTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402