Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   KJP47_RS02475 Genome accession   NZ_OX419577
Coordinates   487194..487628 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis isolate NRS6120     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 482194..492628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP47_RS02445 (NRS6120_02595) ydaD 482850..483706 (+) 857 Protein_439 SDR family oxidoreductase -
  KJP47_RS02450 (NRS6120_02600) lyxE 483722..484225 (+) 504 WP_213383158.1 D-lyxose ketol-isomerase -
  KJP47_RS02455 (NRS6120_02605) ydaF 484311..484862 (+) 552 WP_213383160.1 GNAT family protein -
  KJP47_RS02460 (NRS6120_02610) ydaG 484940..485362 (+) 423 WP_213383162.1 pyridoxamine 5'-phosphate oxidase family protein -
  KJP47_RS02465 (NRS6120_02620) amj 485867..486676 (+) 810 WP_213383164.1 lipid II flippase Amj family protein -
  KJP47_RS02470 (NRS6120_02625) ydzA 486721..487011 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  KJP47_RS02475 (NRS6120_02630) lrpC 487194..487628 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  KJP47_RS02480 (NRS6120_02635) topB 487693..489876 (+) 2184 WP_213383166.1 DNA topoisomerase III -
  KJP47_RS02485 (NRS6120_02640) mutT 489987..490439 (+) 453 WP_213383168.1 NUDIX hydrolase -
  KJP47_RS02490 (NRS6120_02645) poxB 490503..492227 (+) 1725 WP_213383170.1 pyruvate oxidase -
  KJP47_RS02495 - 492219..492424 (-) 206 Protein_449 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=1041016 KJP47_RS02475 WP_003246585.1 487194..487628(+) (lrpC) [Bacillus subtilis isolate NRS6120]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1041016 KJP47_RS02475 WP_003246585.1 487194..487628(+) (lrpC) [Bacillus subtilis isolate NRS6120]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAATGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1