Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   CF58_RS23545 Genome accession   NZ_CP007392
Coordinates   4854402..4855394 (+) Length   330 a.a.
NCBI ID   WP_000224477.1    Uniprot ID   -
Organism   Escherichia coli strain ST2747     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4849402..4860394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF58_RS23520 (CF58_30010) rbsD 4849526..4849945 (+) 420 WP_001318146.1 D-ribose pyranase -
  CF58_RS23525 (CF58_30015) rbsA 4849953..4851458 (+) 1506 WP_025211012.1 ribose ABC transporter ATP-binding protein RbsA -
  CF58_RS23530 (CF58_30020) rbsC 4851463..4852428 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  CF58_RS23535 (CF58_30025) rbsB 4852453..4853343 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  CF58_RS23540 (CF58_30030) rbsK 4853469..4854398 (+) 930 WP_001551941.1 ribokinase -
  CF58_RS23545 (CF58_30035) cytR 4854402..4855394 (+) 993 WP_000224477.1 ribose operon transcriptional repressor RbsR Regulator
  CF58_RS23550 (CF58_30040) mdtD 4855360..4856787 (-) 1428 WP_025211013.1 multidrug transporter subunit MdtD -
  CF58_RS23555 (CF58_30045) yieP 4856810..4857502 (-) 693 WP_001131177.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36641.93 Da        Isoelectric Point: 5.2141

>NTDB_id=104097 CF58_RS23545 WP_000224477.1 4854402..4855394(+) (cytR) [Escherichia coli strain ST2747]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRTAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=104097 CF58_RS23545 WP_000224477.1 4854402..4855394(+) (cytR) [Escherichia coli strain ST2747]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGACGGCGATGAAACGTGCGGGCCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACACCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGCTGTATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment