Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   KJP51_RS12915 Genome accession   NZ_OX419576
Coordinates   2511635..2512762 (+) Length   375 a.a.
NCBI ID   WP_069839531.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6105     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2506635..2517762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP51_RS12875 (NRS6105_12785) - 2507166..2507561 (-) 396 WP_029727083.1 DsrE/DsrF/DrsH-like family protein -
  KJP51_RS12880 (NRS6105_12790) - 2507583..2508140 (-) 558 WP_029727084.1 sulfurtransferase TusA family protein -
  KJP51_RS12885 (NRS6105_12795) - 2508205..2508573 (-) 369 WP_029727085.1 rhodanese-like domain-containing protein -
  KJP51_RS12890 (NRS6105_12800) - 2508613..2509095 (-) 483 WP_029727086.1 DsrE/DsrF/DrsH-like family protein -
  KJP51_RS12895 (NRS6105_12805) - 2509262..2509522 (-) 261 WP_029727087.1 metal-sensitive transcriptional regulator -
  KJP51_RS12900 (NRS6105_12810) - 2509541..2509897 (-) 357 WP_189269891.1 sulfurtransferase -
  KJP51_RS12905 (NRS6105_12815) - 2510291..2510857 (-) 567 WP_029727089.1 cupin domain-containing protein -
  KJP51_RS12910 (NRS6105_12820) - 2510982..2511236 (-) 255 WP_248337392.1 DUF3850 domain-containing protein -
  KJP51_RS12915 (NRS6105_12825) rapC 2511635..2512762 (+) 1128 WP_069839531.1 response regulator aspartate phosphatase RapE Regulator
  KJP51_RS12920 (NRS6105_12830) phrE 2512752..2512886 (+) 135 WP_014114495.1 phosphatase RapE inhibitor PhrE -
  KJP51_RS12925 (NRS6105_12835) - 2513111..2514877 (+) 1767 WP_153940201.1 T7SS effector LXG polymorphic toxin -
  KJP51_RS12930 (NRS6105_12840) - 2514891..2515355 (+) 465 WP_153940202.1 SMI1/KNR4 family protein -
  KJP51_RS12935 (NRS6105_12845) - 2515563..2516285 (-) 723 WP_153940203.1 NPP1 family protein -
  KJP51_RS12940 (NRS6105_12850) cwlA 2516479..2517297 (-) 819 WP_153940204.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44608.41 Da        Isoelectric Point: 7.5546

>NTDB_id=1040947 KJP51_RS12915 WP_069839531.1 2511635..2512762(+) (rapC) [Bacillus subtilis isolate NRS6105]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTLPSDENRMELSEYL
KKIEGHKKKLDNMRAYYYNFFRGMYEFRNGEYTKAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEDLALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=1040947 KJP51_RS12915 WP_069839531.1 2511635..2512762(+) (rapC) [Bacillus subtilis isolate NRS6105]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAAATTAATGAATGGCATAGGCATATTCAAAAATTCAACGTAACTGA
TGCTGAAATGTTAAAAGCTGAAATCGAACGTGATATAGAGGTTATGGAAGAAGATCAAGACTTGCTTATTTATTATCAAC
TAATGGCCTTTCGCCATAAGATCATGTTGGAATACACGCTACCTTCTGATGAAAACCGAATGGAACTTTCAGAATATTTG
AAGAAAATCGAAGGACATAAGAAAAAACTAGACAATATGCGGGCATATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAAGGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCAACGATTTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAGTTATCCGAAGTCTATTATCATATGAAAATGACTCATATCTCAATGCACTACGCCGAG
CTTTCATACAATATCTATAAAAAACATGAACTTTATTCTGTTCGGCGTATACAGTGCCATTTTGTCATTGCCGGTAACTA
TGATGACCTTGAAAATCATGAAAAGGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCCGAGTTGCTTAAAAGTAAAA
ATACTCACATCTATGCCACCGCATTTTTCAATCTCGGTAACTGCTATCACAAAATGGACAACTTAAATAAGGCTGCACGT
TACATCGAACAAGCCTTGGTTCAATACAGAAAAATAAACTCTGACGTACTTCCGCAAGCTTATCATGACTTAGCGTTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATAAGAAGTGCTGTAGATTTTAAAGACG
AACTTTTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTCCTCAACATTTTT
TCTCGTTTAGAGAATGGCAAAGGATACCCTTATCTGGAAGATCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_12)

(184-246)

Tetratricopeptide repeat (TPR_8)

(259-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.161

100

0.416
  rapF Bacillus subtilis subsp. subtilis str. 168

38.462

100

0.387