Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   KJP51_RS11415 Genome accession   NZ_OX419576
Coordinates   2253974..2255464 (-) Length   496 a.a.
NCBI ID   WP_015251799.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2248974..2260464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP51_RS11385 (NRS6105_11300) gudB 2249118..2250392 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  KJP51_RS11390 (NRS6105_11305) mecB 2250548..2251132 (-) 585 WP_003230533.1 genetic competence negative regulator -
  KJP51_RS11395 (NRS6105_11310) ypbG 2251291..2252070 (-) 780 WP_015251802.1 metallophosphoesterase -
  KJP51_RS11400 (NRS6105_11315) ypbF 2252157..2252600 (-) 444 WP_003230531.1 YpbF family protein -
  KJP51_RS11405 (NRS6105_11320) ypbE 2252663..2253394 (-) 732 WP_038429216.1 LysM peptidoglycan-binding domain-containing protein -
  KJP51_RS11410 (NRS6105_11325) ypbD 2253345..2253947 (-) 603 WP_003230529.1 CPBP family intramembrane glutamic endopeptidase -
  KJP51_RS11415 (NRS6105_11330) recS 2253974..2255464 (-) 1491 WP_015251799.1 ATP-dependent DNA helicase RecQ Machinery gene
  KJP51_RS11420 (NRS6105_11335) gmmB 2255457..2256515 (-) 1059 WP_213379593.1 helix-turn-helix domain-containing protein -
  KJP51_RS11425 (NRS6105_11340) fer 2256781..2257029 (+) 249 WP_003225461.1 ferredoxin -
  KJP51_RS11430 (NRS6105_11345) fmnP 2257069..2257641 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  KJP51_RS11435 (NRS6105_11350) serA 2258138..2259715 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56509.05 Da        Isoelectric Point: 6.4518

>NTDB_id=1040928 KJP51_RS11415 WP_015251799.1 2253974..2255464(-) (recS) [Bacillus subtilis isolate NRS6105]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1040928 KJP51_RS11415 WP_015251799.1 2253974..2255464(-) (recS) [Bacillus subtilis isolate NRS6105]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTCGA
GCTGCAGCATGCTGTACGGCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGCCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTAATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.798

100

0.998

Multiple sequence alignment