Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACDI98_RS21645 Genome accession   NZ_CP167981
Coordinates   4485630..4486226 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain LA64     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4480630..4491226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDI98_RS21630 (ACDI98_21630) helD 4480838..4482892 (-) 2055 WP_004224033.1 DNA helicase IV -
  ACDI98_RS21635 (ACDI98_21635) - 4483017..4483463 (+) 447 WP_004224032.1 YccF domain-containing protein -
  ACDI98_RS21640 (ACDI98_21640) yccS 4483481..4485616 (+) 2136 WP_002898422.1 YccS family putative transporter -
  ACDI98_RS21645 (ACDI98_21645) sxy/tfoX 4485630..4486226 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACDI98_RS21650 (ACDI98_21650) sulA 4486575..4487084 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ACDI98_RS21655 (ACDI98_21655) ompA 4487437..4488507 (+) 1071 WP_002898408.1 porin OmpA -
  ACDI98_RS21660 (ACDI98_21660) matP 4488638..4489090 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACDI98_RS21665 (ACDI98_21665) - 4489276..4491033 (+) 1758 WP_004224030.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1040733 ACDI98_RS21645 WP_004179217.1 4485630..4486226(-) (sxy/tfoX) [Klebsiella pneumoniae strain LA64]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1040733 ACDI98_RS21645 WP_004179217.1 4485630..4486226(-) (sxy/tfoX) [Klebsiella pneumoniae strain LA64]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment