Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CF58_RS17665 Genome accession   NZ_CP007392
Coordinates   3657128..3657643 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain ST2747     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3652128..3662643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF58_RS17640 (CF58_22650) ygaZ 3652527..3653264 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  CF58_RS17645 (CF58_22655) ygaH 3653254..3653589 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  CF58_RS17650 (CF58_22660) emrR 3653680..3654210 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CF58_RS17655 (CF58_22670) emrA 3654337..3655509 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CF58_RS17660 (CF58_22675) emrB 3655526..3657064 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CF58_RS17665 (CF58_22680) luxS 3657128..3657643 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CF58_RS17670 (CF58_22690) gshA 3657793..3659349 (-) 1557 WP_000611781.1 glutamate--cysteine ligase -
  CF58_RS17675 (CF58_22695) yqaA 3659422..3659850 (-) 429 WP_001287454.1 YqaA family protein -
  CF58_RS17680 (CF58_22700) yqaB 3659847..3660413 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CF58_RS17715 (CF58_22755) csrA 3661732..3661917 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=104070 CF58_RS17665 WP_001130211.1 3657128..3657643(-) (luxS) [Escherichia coli strain ST2747]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=104070 CF58_RS17665 WP_001130211.1 3657128..3657643(-) (luxS) [Escherichia coli strain ST2747]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment