Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   KJP57_RS07050 Genome accession   NZ_OX419573
Coordinates   1335467..1336603 (+) Length   378 a.a.
NCBI ID   WP_080326348.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6085     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1330467..1341603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP57_RS07030 (NRS6085_07025) uxaA 1330916..1332409 (+) 1494 WP_128737770.1 altronate dehydratase family protein -
  KJP57_RS07035 (NRS6085_07030) yjnA 1332448..1333212 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  KJP57_RS07040 (NRS6085_07035) yjoA 1333437..1333901 (-) 465 WP_014479541.1 DinB family protein -
  KJP57_RS07045 (NRS6085_07040) yjoB 1334050..1335321 (+) 1272 WP_128737771.1 ATPase YjoB -
  KJP57_RS07050 (NRS6085_07045) rapC 1335467..1336603 (+) 1137 WP_080326348.1 response regulator aspartate phosphatase RapA Regulator
  KJP57_RS07055 (NRS6085_07050) phrA 1336593..1336727 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  KJP57_RS07060 (NRS6085_07055) yjpA 1336757..1337014 (-) 258 WP_124059754.1 YciI family protein -
  KJP57_RS07065 (NRS6085_07060) xlyB 1337135..1338088 (+) 954 WP_128737772.1 N-acetylmuramoyl-L-alanine amidase -
  KJP57_RS07070 (NRS6085_07065) yjqA 1338128..1338505 (-) 378 WP_128738604.1 PH domain-containing protein -
  KJP57_RS07075 (NRS6085_07070) pghB 1338610..1339212 (+) 603 WP_128737773.1 poly-gamma-glutamate hydrolase family protein -
  KJP57_RS07080 (NRS6085_07075) xpdC 1339289..1340125 (+) 837 WP_003245071.1 manganese catalase family protein -
  KJP57_RS07085 (NRS6085_07080) xkdA 1340169..1340765 (-) 597 WP_024572596.1 ImmA/IrrE family metallo-endopeptidase -
  KJP57_RS07090 (NRS6085_07085) xre 1340928..1341269 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45002.22 Da        Isoelectric Point: 4.7640

>NTDB_id=1040586 KJP57_RS07050 WP_080326348.1 1335467..1336603(+) (rapC) [Bacillus subtilis isolate NRS6085]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNAAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=1040586 KJP57_RS07050 WP_080326348.1 1335467..1336603(+) (rapC) [Bacillus subtilis isolate NRS6085]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAGGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGCCGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418