Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | QUE60_RS02700 | Genome accession | NZ_AP028142 |
| Coordinates | 512084..513445 (+) | Length | 453 a.a. |
| NCBI ID | WP_286227155.1 | Uniprot ID | - |
| Organism | Polynucleobacter sp. HIN11 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 507084..518445
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE60_RS02690 (PHIN11_05160) | - | 509684..511588 (+) | 1905 | WP_286227475.1 | potassium transporter Kup | - |
| QUE60_RS02695 (PHIN11_05170) | - | 511588..512082 (+) | 495 | WP_286227154.1 | hypothetical protein | - |
| QUE60_RS02700 (PHIN11_05180) | radA | 512084..513445 (+) | 1362 | WP_286227155.1 | DNA repair protein RadA | Machinery gene |
| QUE60_RS02705 (PHIN11_05190) | prmB | 513442..514380 (-) | 939 | WP_286227156.1 | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | - |
| QUE60_RS02710 (PHIN11_05200) | dapE | 514373..515521 (-) | 1149 | WP_286227157.1 | succinyl-diaminopimelate desuccinylase | - |
| QUE60_RS02715 (PHIN11_05210) | dapD | 515525..516352 (-) | 828 | WP_286225838.1 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | - |
Sequence
Protein
Download Length: 453 a.a. Molecular weight: 48230.97 Da Isoelectric Point: 7.1832
>NTDB_id=104035 QUE60_RS02700 WP_286227155.1 512084..513445(+) (radA) [Polynucleobacter sp. HIN11]
MAKTKTLYVCQACGGSSPKWQGQCPACDAWNTLEESLAETANHRFQGLAKSIPRQKLVSIEAQDSPRLPTGISELDRVLG
GGLVAGGVVLLGGDPGIGKSTLLLQALAELSIQGIDVLYSSGEESAAQIALRAQRISLNAPQLEILAEIQLEKLLLSVEA
AQPQVLVVDSIQTLYSEAFTSAPGSVAQVRECAAQLTRLAKSSGICILLVGHVTKDGHLAGPRVLEHIVDTVLYFEGDTH
SSFRLVRSIKNRFGAVNELGVFAMTEKGLKGVNNPSALFLSQHPQTVPGSCVLVTQEGSRPLLVEIQALVDTAHIPNPRR
LAVGLEQARLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAITSSIRNRALPKHLVVFGEVGLAGEIRP
CPRGQERLKEAAKLGFKIAIIPKANLPKTKIADLQMIAVERIDEAIAAVNDLF
MAKTKTLYVCQACGGSSPKWQGQCPACDAWNTLEESLAETANHRFQGLAKSIPRQKLVSIEAQDSPRLPTGISELDRVLG
GGLVAGGVVLLGGDPGIGKSTLLLQALAELSIQGIDVLYSSGEESAAQIALRAQRISLNAPQLEILAEIQLEKLLLSVEA
AQPQVLVVDSIQTLYSEAFTSAPGSVAQVRECAAQLTRLAKSSGICILLVGHVTKDGHLAGPRVLEHIVDTVLYFEGDTH
SSFRLVRSIKNRFGAVNELGVFAMTEKGLKGVNNPSALFLSQHPQTVPGSCVLVTQEGSRPLLVEIQALVDTAHIPNPRR
LAVGLEQARLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAITSSIRNRALPKHLVVFGEVGLAGEIRP
CPRGQERLKEAAKLGFKIAIIPKANLPKTKIADLQMIAVERIDEAIAAVNDLF
Nucleotide
Download Length: 1362 bp
>NTDB_id=104035 QUE60_RS02700 WP_286227155.1 512084..513445(+) (radA) [Polynucleobacter sp. HIN11]
ATGGCGAAGACCAAAACCCTATATGTTTGCCAAGCGTGTGGAGGCAGTTCTCCTAAATGGCAGGGCCAATGTCCTGCATG
CGATGCATGGAACACGCTTGAAGAGTCTTTGGCCGAGACTGCCAACCATCGTTTTCAAGGACTTGCGAAATCAATCCCAC
GACAAAAATTAGTGAGCATTGAAGCGCAGGATTCGCCACGCTTGCCCACGGGAATTTCGGAGCTCGATCGCGTGCTGGGT
GGGGGATTGGTGGCGGGTGGTGTGGTCTTGCTCGGCGGTGATCCTGGGATTGGTAAGTCCACTTTATTATTACAAGCCCT
CGCTGAGCTGAGTATTCAAGGGATTGATGTTTTATATAGCTCCGGGGAGGAGTCCGCCGCTCAAATTGCATTGCGTGCTC
AGCGGATTTCTTTAAATGCACCTCAACTTGAAATCTTGGCAGAGATTCAGTTAGAAAAGTTATTGCTATCGGTTGAGGCT
GCTCAGCCACAGGTATTAGTGGTTGACTCTATCCAGACTTTGTATTCCGAGGCATTTACATCTGCGCCTGGATCAGTCGC
TCAGGTACGTGAGTGTGCCGCGCAGTTAACACGTCTCGCAAAGTCAAGCGGTATCTGTATTTTATTAGTTGGCCATGTCA
CCAAAGATGGCCATTTGGCTGGTCCACGCGTACTCGAACATATTGTCGATACCGTTTTATATTTTGAGGGGGATACGCAT
TCGTCATTTCGCTTAGTGCGCTCGATTAAAAACCGCTTTGGTGCGGTCAATGAGCTCGGCGTCTTTGCAATGACCGAGAA
AGGTCTCAAGGGTGTCAACAATCCGTCCGCTCTTTTTCTATCGCAACATCCGCAAACAGTACCTGGTTCCTGTGTATTGG
TAACTCAAGAGGGGAGTCGACCGCTGTTAGTTGAGATTCAGGCGCTAGTTGATACGGCGCATATTCCTAACCCTAGACGC
CTAGCGGTTGGCTTGGAACAAGCACGTTTGGCGATGCTGTTGGCGGTCTTGCACCGTCATGCCGGCATTGCCTGCTTTGA
TCAAGATGTCTTTTTGAATGCAGTGGGCGGGGTCAAAATTACCGAACCAGCTGCTGACCTTGCGGTTCTGCTTGCGATCA
CATCATCAATCCGTAATCGCGCTCTTCCAAAGCATTTAGTGGTATTTGGGGAGGTTGGTTTGGCGGGAGAAATTCGCCCA
TGCCCGCGAGGTCAGGAGAGGCTCAAGGAAGCTGCCAAATTGGGATTTAAGATTGCGATTATTCCAAAGGCTAATTTGCC
AAAAACAAAAATTGCTGACTTGCAAATGATTGCAGTCGAGCGAATTGATGAGGCGATTGCTGCTGTAAACGACTTGTTCT
AG
ATGGCGAAGACCAAAACCCTATATGTTTGCCAAGCGTGTGGAGGCAGTTCTCCTAAATGGCAGGGCCAATGTCCTGCATG
CGATGCATGGAACACGCTTGAAGAGTCTTTGGCCGAGACTGCCAACCATCGTTTTCAAGGACTTGCGAAATCAATCCCAC
GACAAAAATTAGTGAGCATTGAAGCGCAGGATTCGCCACGCTTGCCCACGGGAATTTCGGAGCTCGATCGCGTGCTGGGT
GGGGGATTGGTGGCGGGTGGTGTGGTCTTGCTCGGCGGTGATCCTGGGATTGGTAAGTCCACTTTATTATTACAAGCCCT
CGCTGAGCTGAGTATTCAAGGGATTGATGTTTTATATAGCTCCGGGGAGGAGTCCGCCGCTCAAATTGCATTGCGTGCTC
AGCGGATTTCTTTAAATGCACCTCAACTTGAAATCTTGGCAGAGATTCAGTTAGAAAAGTTATTGCTATCGGTTGAGGCT
GCTCAGCCACAGGTATTAGTGGTTGACTCTATCCAGACTTTGTATTCCGAGGCATTTACATCTGCGCCTGGATCAGTCGC
TCAGGTACGTGAGTGTGCCGCGCAGTTAACACGTCTCGCAAAGTCAAGCGGTATCTGTATTTTATTAGTTGGCCATGTCA
CCAAAGATGGCCATTTGGCTGGTCCACGCGTACTCGAACATATTGTCGATACCGTTTTATATTTTGAGGGGGATACGCAT
TCGTCATTTCGCTTAGTGCGCTCGATTAAAAACCGCTTTGGTGCGGTCAATGAGCTCGGCGTCTTTGCAATGACCGAGAA
AGGTCTCAAGGGTGTCAACAATCCGTCCGCTCTTTTTCTATCGCAACATCCGCAAACAGTACCTGGTTCCTGTGTATTGG
TAACTCAAGAGGGGAGTCGACCGCTGTTAGTTGAGATTCAGGCGCTAGTTGATACGGCGCATATTCCTAACCCTAGACGC
CTAGCGGTTGGCTTGGAACAAGCACGTTTGGCGATGCTGTTGGCGGTCTTGCACCGTCATGCCGGCATTGCCTGCTTTGA
TCAAGATGTCTTTTTGAATGCAGTGGGCGGGGTCAAAATTACCGAACCAGCTGCTGACCTTGCGGTTCTGCTTGCGATCA
CATCATCAATCCGTAATCGCGCTCTTCCAAAGCATTTAGTGGTATTTGGGGAGGTTGGTTTGGCGGGAGAAATTCGCCCA
TGCCCGCGAGGTCAGGAGAGGCTCAAGGAAGCTGCCAAATTGGGATTTAAGATTGCGATTATTCCAAAGGCTAATTTGCC
AAAAACAAAAATTGCTGACTTGCAAATGATTGCAGTCGAGCGAATTGATGAGGCGATTGCTGCTGTAAACGACTTGTTCT
AG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
49.89 |
100 |
0.501 |
| radA | Streptococcus mitis NCTC 12261 |
46.239 |
99.779 |
0.461 |
| radA | Streptococcus mitis SK321 |
46.239 |
99.779 |
0.461 |
| radA | Streptococcus pneumoniae TIGR4 |
46.018 |
99.779 |
0.459 |
| radA | Streptococcus pneumoniae D39 |
46.018 |
99.779 |
0.459 |
| radA | Streptococcus pneumoniae Rx1 |
46.018 |
99.779 |
0.459 |
| radA | Streptococcus pneumoniae R6 |
46.018 |
99.779 |
0.459 |