Detailed information NTG0104024

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: QUE67_RS02830
• Genome accession: NZ_AP028141
• Coordinates: 535166..536527 (+)
• Length: 453 a.a.
• NCBI ID: WP_286227155.1
• Uniprot ID: -
• Organism: Polynucleobacter sp. HIN10
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 530166..541527

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUE67_RS02820 (PHIN10_05400)	-	532766..534670 (+)	1905	WP_286227475.1	potassium transporter Kup	-
QUE67_RS02825 (PHIN10_05410)	-	534670..535164 (+)	495	WP_286227154.1	hypothetical protein	-
QUE67_RS02830 (PHIN10_05420)	radA	535166..536527 (+)	1362	WP_286227155.1	DNA repair protein RadA	Machinery gene
QUE67_RS02835 (PHIN10_05430)	prmB	536524..537429 (-)	906	WP_286308668.1	50S ribosomal protein L3 N(5)-glutamine methyltransferase	-
QUE67_RS02840 (PHIN10_05440)	dapE	537455..538603 (-)	1149	WP_286227157.1	succinyl-diaminopimelate desuccinylase	-
QUE67_RS02845 (PHIN10_05450)	dapD	538607..539434 (-)	828	WP_286225838.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 48230.97 Da
• Isoelectric Point: 7.1832

>NTDB_id=104024 QUE67_RS02830 WP_286227155.1 535166..536527(+) (radA) [Polynucleobacter sp. HIN10]
MAKTKTLYVCQACGGSSPKWQGQCPACDAWNTLEESLAETANHRFQGLAKSIPRQKLVSIEAQDSPRLPTGISELDRVLG
GGLVAGGVVLLGGDPGIGKSTLLLQALAELSIQGIDVLYSSGEESAAQIALRAQRISLNAPQLEILAEIQLEKLLLSVEA
AQPQVLVVDSIQTLYSEAFTSAPGSVAQVRECAAQLTRLAKSSGICILLVGHVTKDGHLAGPRVLEHIVDTVLYFEGDTH
SSFRLVRSIKNRFGAVNELGVFAMTEKGLKGVNNPSALFLSQHPQTVPGSCVLVTQEGSRPLLVEIQALVDTAHIPNPRR
LAVGLEQARLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAITSSIRNRALPKHLVVFGEVGLAGEIRP
CPRGQERLKEAAKLGFKIAIIPKANLPKTKIADLQMIAVERIDEAIAAVNDLF

Nucleotide

• Length: 1362 bp

>NTDB_id=104024 QUE67_RS02830 WP_286227155.1 535166..536527(+) (radA) [Polynucleobacter sp. HIN10]
ATGGCGAAGACCAAAACCCTATATGTTTGCCAAGCGTGTGGAGGCAGTTCTCCTAAATGGCAGGGCCAATGTCCTGCATG
CGATGCATGGAACACGCTTGAAGAGTCTTTGGCCGAGACTGCCAACCATCGTTTTCAAGGACTTGCGAAATCAATCCCAC
GACAAAAATTAGTGAGCATTGAAGCGCAGGATTCGCCACGCTTGCCCACGGGAATTTCGGAGCTCGATCGCGTGCTGGGT
GGGGGATTGGTGGCGGGTGGTGTGGTCTTGCTCGGCGGTGATCCTGGGATTGGTAAGTCCACTTTATTATTACAAGCCCT
CGCTGAGCTGAGTATTCAAGGGATTGATGTTTTATATAGCTCCGGGGAGGAGTCCGCCGCTCAAATTGCATTGCGTGCTC
AGCGGATTTCTTTAAATGCACCTCAACTTGAAATCTTGGCAGAGATTCAGTTAGAAAAGTTATTGCTATCGGTTGAGGCT
GCTCAGCCACAGGTATTAGTGGTTGACTCTATCCAGACTTTGTATTCCGAGGCATTTACATCTGCGCCTGGATCAGTCGC
TCAGGTACGTGAGTGTGCCGCGCAGTTAACACGTCTCGCAAAGTCAAGCGGTATCTGTATTTTATTAGTTGGCCATGTCA
CCAAAGATGGCCATTTGGCTGGTCCACGCGTACTCGAACATATTGTCGATACCGTTTTATATTTTGAGGGGGATACGCAT
TCGTCATTTCGCTTAGTGCGCTCGATTAAAAACCGCTTTGGTGCGGTCAATGAGCTCGGCGTCTTTGCAATGACCGAGAA
AGGTCTCAAGGGTGTCAACAATCCGTCCGCTCTTTTTCTATCGCAACATCCGCAAACAGTACCTGGTTCCTGTGTATTGG
TAACTCAAGAGGGGAGTCGACCGCTGTTAGTTGAGATTCAGGCGCTAGTTGATACGGCGCATATTCCTAACCCTAGACGC
CTAGCGGTTGGCTTGGAACAAGCACGTTTGGCGATGCTGTTGGCGGTCTTGCACCGTCATGCCGGCATTGCCTGCTTTGA
TCAAGATGTCTTTTTGAATGCAGTGGGCGGGGTCAAAATTACCGAACCAGCTGCTGACCTTGCGGTTCTGCTTGCGATCA
CATCATCAATCCGTAATCGCGCTCTTCCAAAGCATTTAGTGGTATTTGGGGAGGTTGGTTTGGCGGGAGAAATTCGCCCA
TGCCCGCGAGGTCAGGAGAGGCTCAAGGAAGCTGCCAAATTGGGATTTAAGATTGCGATTATTCCAAAGGCTAATTTGCC
AAAAACAAAAATTGCTGACTTGCAAATGATTGCAGTCGAGCGAATTGATGAGGCGATTGCTGCTGTAAACGACTTGTTCT
AG

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (63-217)

• Lon protease (S16) C-terminal proteolytic domain (Lon_C) (358-447)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.89	100	0.501
radA	Streptococcus mitis NCTC 12261	46.239	99.779	0.461
radA	Streptococcus mitis SK321	46.239	99.779	0.461
radA	Streptococcus pneumoniae TIGR4	46.018	99.779	0.459
radA	Streptococcus pneumoniae D39	46.018	99.779	0.459
radA	Streptococcus pneumoniae Rx1	46.018	99.779	0.459
radA	Streptococcus pneumoniae R6	46.018	99.779	0.459