Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   CF61_RS24130 Genome accession   NZ_CP007391
Coordinates   4820233..4821225 (-) Length   330 a.a.
NCBI ID   WP_077767503.1    Uniprot ID   -
Organism   Escherichia coli strain ST540     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4815233..4826225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF61_RS24120 (CF61_31265) yieP 4818125..4818817 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  CF61_RS24125 (CF61_31270) mdtD 4818840..4820267 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  CF61_RS24130 (CF61_31275) cytR 4820233..4821225 (-) 993 WP_077767503.1 ribose operon transcriptional repressor RbsR Regulator
  CF61_RS24135 (CF61_31280) rbsK 4821229..4822158 (-) 930 WP_001300603.1 ribokinase -
  CF61_RS24140 (CF61_31285) rbsB 4822284..4823174 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  CF61_RS24145 (CF61_31290) rbsC 4823199..4824164 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  CF61_RS24150 (CF61_31295) rbsA 4824169..4825674 (-) 1506 WP_001544214.1 ribose ABC transporter ATP-binding protein RbsA -
  CF61_RS24155 (CF61_31300) rbsD 4825682..4826101 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36711.04 Da        Isoelectric Point: 5.4086

>NTDB_id=104019 CF61_RS24130 WP_077767503.1 4820233..4821225(-) (cytR) [Escherichia coli strain ST540]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNRGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=104019 CF61_RS24130 WP_077767503.1 4820233..4821225(-) (cytR) [Escherichia coli strain ST540]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACCGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

39.088

93.03

0.364