Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KJP42_RS13055 Genome accession   NZ_OX419567
Coordinates   2538023..2538433 (-) Length   136 a.a.
NCBI ID   WP_009967785.1    Uniprot ID   P42983
Organism   Bacillus subtilis isolate NRS6107     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2533023..2543433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP42_RS13025 - 2533110..2533250 (+) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -
  KJP42_RS13030 (NRS6107_12975) yqeF 2533556..2534287 (-) 732 WP_003229964.1 SGNH/GDSL hydrolase family protein -
  KJP42_RS13035 (NRS6107_12980) cwlH 2534539..2535291 (-) 753 WP_003229963.1 N-acetylmuramoyl-L-alanine amidase CwlH -
  KJP42_RS13040 (NRS6107_12985) yqeD 2535478..2536104 (+) 627 WP_003229962.1 TVP38/TMEM64 family protein -
  KJP42_RS13045 (NRS6107_12990) gnd 2536123..2537016 (-) 894 WP_003229961.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  KJP42_RS13050 (NRS6107_12995) yqeB 2537268..2537990 (+) 723 WP_010886572.1 hypothetical protein -
  KJP42_RS13055 (NRS6107_13000) nucA/comI 2538023..2538433 (-) 411 WP_009967785.1 sporulation-specific Dnase NucB Machinery gene
  KJP42_RS13060 (NRS6107_13005) - 2538629..2538976 (+) 348 Protein_2524 sigma-70 family RNA polymerase sigma factor -
  KJP42_RS13065 (NRS6107_13010) spoIVCA 2539007..2540467 (-) 1461 WP_223257626.1 site-specific DNA recombinase SpoIVCA -
  KJP42_RS13070 - 2540425..2540603 (-) 179 Protein_2526 hypothetical protein -
  KJP42_RS13075 (NRS6107_13015) arsC 2540958..2541377 (-) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  KJP42_RS13080 (NRS6107_13020) acr3 2541389..2542429 (-) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  KJP42_RS13085 (NRS6107_13025) yqcK 2542452..2542892 (-) 441 WP_003229954.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  KJP42_RS13090 (NRS6107_13030) arsR 2542953..2543270 (-) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14967.97 Da        Isoelectric Point: 5.1853

>NTDB_id=1040167 KJP42_RS13055 WP_009967785.1 2538023..2538433(-) (nucA/comI) [Bacillus subtilis isolate NRS6107]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1040167 KJP42_RS13055 WP_009967785.1 2538023..2538433(-) (nucA/comI) [Bacillus subtilis isolate NRS6107]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG

Domains

Predicted by InterProScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42983

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529

Multiple sequence alignment