Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ACDW34_RS01970 Genome accession   NZ_CP167896
Coordinates   428536..428862 (+) Length   108 a.a.
NCBI ID   WP_130074517.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain p38     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 423536..433862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDW34_RS01945 (ACDW34_01945) hemC 424093..425016 (+) 924 WP_171457493.1 hydroxymethylbilane synthase -
  ACDW34_RS01950 (ACDW34_01950) - 425016..425798 (+) 783 WP_372403908.1 uroporphyrinogen-III synthase -
  ACDW34_RS01955 (ACDW34_01955) - 425795..426640 (+) 846 WP_372403909.1 hypothetical protein -
  ACDW34_RS01960 (ACDW34_01960) - 426642..427838 (+) 1197 WP_372403910.1 heme biosynthesis protein HemY -
  ACDW34_RS01965 (ACDW34_01965) - 427848..428279 (+) 432 WP_130074516.1 thioesterase family protein -
  ACDW34_RS01970 (ACDW34_01970) hns 428536..428862 (+) 327 WP_130074517.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACDW34_RS01975 (ACDW34_01975) gspN 429034..429777 (+) 744 WP_130074518.1 type II secretion system protein N -
  ACDW34_RS01980 (ACDW34_01980) - 429780..430637 (+) 858 WP_372403911.1 type II secretion system protein N -
  ACDW34_RS01985 (ACDW34_01985) gspD 430679..432919 (+) 2241 WP_180044926.1 type II secretion system secretin GspD -
  ACDW34_RS01990 (ACDW34_01990) - 433045..433761 (+) 717 WP_372403912.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12389.13 Da        Isoelectric Point: 5.9595

>NTDB_id=1040156 ACDW34_RS01970 WP_130074517.1 428536..428862(+) (hns) [Acinetobacter piscicola strain p38]
MMPDISDLSVEELERLAAQAEALIESKKDQKIEDAYNKIIEIAEAAGLTLEQFIEYGTHKRKKTTRKAVEPRYRNKNNAA
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1040156 ACDW34_RS01970 WP_130074517.1 428536..428862(+) (hns) [Acinetobacter piscicola strain p38]
ATGATGCCTGATATTAGTGATCTTTCGGTAGAAGAGTTAGAGCGTTTAGCAGCACAAGCTGAAGCCTTGATTGAATCAAA
AAAAGATCAAAAAATAGAAGATGCTTATAATAAAATTATTGAAATTGCAGAAGCTGCGGGTCTAACTTTAGAACAGTTCA
TCGAATATGGTACACATAAACGTAAAAAGACAACGCGTAAAGCCGTTGAACCACGTTATCGTAACAAAAACAATGCAGCA
GAAACATGGACTGGACGTGGTAAACAACCTCGTTGGTTGGTCGCGGAAATTGAAAAAGGCGCTAAATTAGAAGATTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

80.556

100

0.806

Multiple sequence alignment