Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ACDW34_RS01240 Genome accession   NZ_CP167896
Coordinates   259477..260631 (-) Length   384 a.a.
NCBI ID   WP_372403852.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain p38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 254477..265631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDW34_RS01220 (ACDW34_01220) - 255535..256179 (+) 645 WP_130074799.1 TetR/AcrR family transcriptional regulator -
  ACDW34_RS01225 (ACDW34_01225) - 256323..257198 (+) 876 WP_286435011.1 DMT family transporter -
  ACDW34_RS01230 (ACDW34_01230) - 257678..258247 (-) 570 WP_130074798.1 L-threonylcarbamoyladenylate synthase -
  ACDW34_RS01235 (ACDW34_01235) dprA 258291..259424 (-) 1134 WP_180046515.1 DNA-processing protein DprA Machinery gene
  ACDW34_RS01240 (ACDW34_01240) tsaP 259477..260631 (-) 1155 WP_372403852.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACDW34_RS01245 (ACDW34_01245) def 260754..261284 (+) 531 WP_130074795.1 peptide deformylase -
  ACDW34_RS01250 (ACDW34_01250) - 261377..261817 (+) 441 WP_130074794.1 DUF2946 family protein -
  ACDW34_RS01255 (ACDW34_01255) - 261890..264007 (+) 2118 WP_372403853.1 TonB-dependent copper receptor -
  ACDW34_RS01260 (ACDW34_01260) - 264102..265289 (+) 1188 WP_372403855.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41532.43 Da        Isoelectric Point: 8.8371

>NTDB_id=1040148 ACDW34_RS01240 WP_372403852.1 259477..260631(-) (tsaP) [Acinetobacter piscicola strain p38]
MIKFFNGTKINATGFKKQVLAMALCISAGVAVVDVAHAAPSPNQNPPSLKANAPHVYVVKRGDTLWDIAGRFLSKPWRWK
EIWASNRHVKNPHWIYPGDKLLLCSLNGRPLVGVDEGDGCDGIIRRHQGGASLRPQVRVESIGNTIPIISSADIKPWLEH
SIIVSPESLIGVPYILGAADNRVITGAGQTVYARGNGLVVGQRYGVYRQAEPYFFVDEKGKKINAGQELTEVASAVAVAG
ENDVTTLELTDSYNAEVRNGDYVLPVYEYNLPSIFYPTAQNEVLTGGKIVRVQGSIGTGAVNGVVTIDRGSVDGAKAGQV
FSIYQQGEVVKDPKTKEPIKLPNQNVGTLMVFKTFERFSYGYILDSALPIKVGSSIQTPAIAEN

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1040148 ACDW34_RS01240 WP_372403852.1 259477..260631(-) (tsaP) [Acinetobacter piscicola strain p38]
ATGATAAAGTTTTTCAATGGCACAAAGATTAATGCCACGGGGTTTAAGAAGCAGGTTTTGGCTATGGCACTCTGCATCAG
TGCAGGTGTAGCTGTAGTGGACGTTGCACATGCAGCGCCGAGTCCAAACCAAAATCCACCCTCTCTAAAAGCCAATGCAC
CGCATGTTTATGTGGTCAAACGTGGCGATACGTTATGGGATATTGCAGGACGATTCCTCAGCAAACCATGGCGTTGGAAA
GAGATTTGGGCCAGTAACCGCCATGTCAAAAACCCACATTGGATCTATCCCGGGGATAAATTATTACTCTGTAGCTTAAA
TGGTCGTCCACTGGTCGGTGTCGATGAGGGTGACGGCTGTGATGGTATTATTCGCCGTCATCAAGGTGGTGCATCTTTAC
GCCCACAAGTACGTGTTGAATCTATTGGAAATACTATTCCAATCATTTCAAGTGCAGATATCAAACCATGGTTAGAACAT
AGTATTATCGTTTCACCTGAATCACTCATTGGCGTGCCTTATATTCTGGGTGCAGCGGATAATCGTGTGATTACAGGTGC
AGGTCAAACCGTCTATGCTCGTGGCAATGGTTTAGTTGTTGGACAACGCTATGGTGTGTATCGTCAAGCTGAGCCATATT
TCTTTGTCGATGAAAAAGGCAAAAAAATCAATGCAGGTCAAGAGCTTACTGAAGTCGCTTCTGCTGTTGCAGTTGCAGGT
GAGAATGATGTTACAACGCTTGAACTGACTGACAGTTATAATGCTGAAGTCCGTAATGGTGATTATGTCTTACCTGTGTA
TGAGTATAATTTACCTTCTATTTTTTATCCTACAGCACAAAATGAAGTACTCACTGGTGGTAAAATCGTTCGTGTACAAG
GCTCAATTGGCACAGGTGCAGTCAATGGTGTTGTAACTATTGATCGTGGTAGCGTAGATGGTGCAAAAGCTGGACAAGTA
TTTAGCATTTACCAACAGGGTGAAGTGGTAAAAGATCCAAAAACCAAAGAACCAATCAAACTACCGAACCAAAATGTCGG
CACTTTGATGGTCTTCAAAACGTTTGAGCGTTTTAGCTATGGCTATATTTTAGATAGTGCATTGCCAATTAAAGTGGGTT
CTTCAATTCAAACCCCTGCGATTGCAGAAAATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

62.73

99.219

0.622

Multiple sequence alignment