Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | QUE62_RS02765 | Genome accession | NZ_AP028140 |
| Coordinates | 529538..530899 (+) | Length | 453 a.a. |
| NCBI ID | WP_286262136.1 | Uniprot ID | - |
| Organism | Polynucleobacter sp. HIN9 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 524538..535899
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE62_RS02755 (PHIN9_05270) | - | 527201..529042 (+) | 1842 | WP_286262548.1 | potassium transporter Kup | - |
| QUE62_RS02760 (PHIN9_05280) | - | 529042..529536 (+) | 495 | WP_286262133.1 | hypothetical protein | - |
| QUE62_RS02765 (PHIN9_05290) | radA | 529538..530899 (+) | 1362 | WP_286262136.1 | DNA repair protein RadA | Machinery gene |
| QUE62_RS02770 (PHIN9_05300) | prmB | 530906..531775 (-) | 870 | WP_286262137.1 | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | - |
| QUE62_RS02775 (PHIN9_05310) | dapE | 531837..532985 (-) | 1149 | WP_286262139.1 | succinyl-diaminopimelate desuccinylase | - |
| QUE62_RS02780 (PHIN9_05320) | dapD | 532989..533816 (-) | 828 | WP_286262141.1 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | - |
Sequence
Protein
Download Length: 453 a.a. Molecular weight: 48295.03 Da Isoelectric Point: 7.1829
>NTDB_id=104014 QUE62_RS02765 WP_286262136.1 529538..530899(+) (radA) [Polynucleobacter sp. HIN9]
MAKTKTLYVCQACGGSSPKWQGQCPACDAWNTLEESLAETANHRFQGLAKSIPRQKLVSIEAQDSPRLPTGITELDRVLG
GGLVAGGVVLLGGDPGIGKSTLLLQALAELSMQGIDVLYSSGEESAAQIALRAQRISLNAPQLEILAEIQLEKLLLSVEA
AQPQVLVVDSIQTLYSEAFTSAPGSVAQVRECAAQLTRLAKSSGICVLLVGHVTKDGHLAGPRVLEHIVDTVLYFEGDTH
SSFRLVRSIKNRFGAVNELGVFAMTEKGLKGVNNPSALFLSQHPQTVPGSCVLVTQEGSRPLLVEIQALVDTAHIPNPRR
LAVGLEQARLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAITSSIRNRALPKHLVVFGEVGLAGEIRP
CPRGQERLKEAAKLGFKIAIIPKANLPKSKITDLQMIAVERIDEAIAAINDLY
MAKTKTLYVCQACGGSSPKWQGQCPACDAWNTLEESLAETANHRFQGLAKSIPRQKLVSIEAQDSPRLPTGITELDRVLG
GGLVAGGVVLLGGDPGIGKSTLLLQALAELSMQGIDVLYSSGEESAAQIALRAQRISLNAPQLEILAEIQLEKLLLSVEA
AQPQVLVVDSIQTLYSEAFTSAPGSVAQVRECAAQLTRLAKSSGICVLLVGHVTKDGHLAGPRVLEHIVDTVLYFEGDTH
SSFRLVRSIKNRFGAVNELGVFAMTEKGLKGVNNPSALFLSQHPQTVPGSCVLVTQEGSRPLLVEIQALVDTAHIPNPRR
LAVGLEQARLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAITSSIRNRALPKHLVVFGEVGLAGEIRP
CPRGQERLKEAAKLGFKIAIIPKANLPKSKITDLQMIAVERIDEAIAAINDLY
Nucleotide
Download Length: 1362 bp
>NTDB_id=104014 QUE62_RS02765 WP_286262136.1 529538..530899(+) (radA) [Polynucleobacter sp. HIN9]
ATGGCAAAGACCAAAACCCTCTATGTTTGCCAAGCGTGTGGAGGCAGTTCTCCTAAATGGCAGGGCCAATGTCCTGCATG
CGATGCATGGAACACGCTTGAAGAGTCTTTGGCTGAGACCGCCAACCATCGTTTTCAGGGATTGGCCAAGTCAATCCCGC
GACAAAAATTAGTGAGCATTGAAGCGCAGGATTCGCCTCGTTTGCCCACAGGAATTACGGAGCTCGATCGCGTGCTGGGT
GGGGGATTGGTAGCCGGTGGAGTAGTTTTGCTCGGCGGTGATCCTGGAATTGGTAAATCCACTTTGCTATTGCAAGCCCT
CGCCGAGCTCAGTATGCAAGGGATTGATGTTTTATATAGCTCCGGAGAGGAGTCTGCTGCTCAAATTGCCTTGCGTGCTC
AACGTATTTCTTTAAATGCACCTCAGCTTGAAATCTTGGCAGAGATTCAGTTAGAAAAGTTATTACTATCGGTTGAGGCT
GCGCAGCCGCAGGTATTGGTAGTTGATTCCATCCAGACTTTGTATTCCGAGGCATTTACATCGGCTCCTGGATCGGTTGC
GCAAGTTCGGGAGTGTGCCGCCCAGTTAACACGTTTGGCGAAGTCAAGTGGCATCTGTGTTTTATTAGTTGGCCATGTGA
CTAAAGATGGTCATTTGGCTGGCCCACGCGTACTTGAGCACATTGTCGATACCGTTTTATATTTTGAGGGCGATACGCAT
TCGTCATTTCGCTTAGTGCGCTCGATTAAAAACCGCTTTGGGGCGGTCAATGAGCTCGGCGTCTTTGCGATGACCGAGAA
AGGTCTCAAGGGTGTCAACAATCCGTCCGCTCTTTTTCTATCGCAACATCCGCAAACGGTGCCTGGCTCCTGTGTATTGG
TAACGCAGGAGGGGAGTCGGCCACTGTTAGTTGAGATTCAGGCGCTGGTTGATACGGCGCATATTCCTAATCCTAGACGC
CTAGCGGTTGGCTTAGAACAGGCGCGTTTGGCCATGCTGTTAGCGGTCTTGCACCGTCATGCTGGAATCGCTTGCTTTGA
TCAGGATGTGTTCCTAAATGCAGTGGGTGGTGTCAAAATTACCGAACCAGCTGCCGATCTTGCGGTTTTGCTTGCGATCA
CATCATCAATTCGTAATCGTGCTCTACCAAAACATTTGGTGGTATTTGGTGAGGTTGGCTTGGCTGGAGAAATTCGCCCA
TGTCCGCGCGGTCAGGAGAGACTCAAGGAGGCCGCTAAATTGGGATTCAAGATTGCAATTATTCCAAAGGCTAATTTGCC
AAAATCCAAAATTACCGATTTACAAATGATCGCAGTTGAGCGGATTGATGAGGCCATCGCTGCTATCAACGACCTGTATT
AG
ATGGCAAAGACCAAAACCCTCTATGTTTGCCAAGCGTGTGGAGGCAGTTCTCCTAAATGGCAGGGCCAATGTCCTGCATG
CGATGCATGGAACACGCTTGAAGAGTCTTTGGCTGAGACCGCCAACCATCGTTTTCAGGGATTGGCCAAGTCAATCCCGC
GACAAAAATTAGTGAGCATTGAAGCGCAGGATTCGCCTCGTTTGCCCACAGGAATTACGGAGCTCGATCGCGTGCTGGGT
GGGGGATTGGTAGCCGGTGGAGTAGTTTTGCTCGGCGGTGATCCTGGAATTGGTAAATCCACTTTGCTATTGCAAGCCCT
CGCCGAGCTCAGTATGCAAGGGATTGATGTTTTATATAGCTCCGGAGAGGAGTCTGCTGCTCAAATTGCCTTGCGTGCTC
AACGTATTTCTTTAAATGCACCTCAGCTTGAAATCTTGGCAGAGATTCAGTTAGAAAAGTTATTACTATCGGTTGAGGCT
GCGCAGCCGCAGGTATTGGTAGTTGATTCCATCCAGACTTTGTATTCCGAGGCATTTACATCGGCTCCTGGATCGGTTGC
GCAAGTTCGGGAGTGTGCCGCCCAGTTAACACGTTTGGCGAAGTCAAGTGGCATCTGTGTTTTATTAGTTGGCCATGTGA
CTAAAGATGGTCATTTGGCTGGCCCACGCGTACTTGAGCACATTGTCGATACCGTTTTATATTTTGAGGGCGATACGCAT
TCGTCATTTCGCTTAGTGCGCTCGATTAAAAACCGCTTTGGGGCGGTCAATGAGCTCGGCGTCTTTGCGATGACCGAGAA
AGGTCTCAAGGGTGTCAACAATCCGTCCGCTCTTTTTCTATCGCAACATCCGCAAACGGTGCCTGGCTCCTGTGTATTGG
TAACGCAGGAGGGGAGTCGGCCACTGTTAGTTGAGATTCAGGCGCTGGTTGATACGGCGCATATTCCTAATCCTAGACGC
CTAGCGGTTGGCTTAGAACAGGCGCGTTTGGCCATGCTGTTAGCGGTCTTGCACCGTCATGCTGGAATCGCTTGCTTTGA
TCAGGATGTGTTCCTAAATGCAGTGGGTGGTGTCAAAATTACCGAACCAGCTGCCGATCTTGCGGTTTTGCTTGCGATCA
CATCATCAATTCGTAATCGTGCTCTACCAAAACATTTGGTGGTATTTGGTGAGGTTGGCTTGGCTGGAGAAATTCGCCCA
TGTCCGCGCGGTCAGGAGAGACTCAAGGAGGCCGCTAAATTGGGATTCAAGATTGCAATTATTCCAAAGGCTAATTTGCC
AAAATCCAAAATTACCGATTTACAAATGATCGCAGTTGAGCGGATTGATGAGGCCATCGCTGCTATCAACGACCTGTATT
AG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
49.451 |
100 |
0.497 |
| radA | Streptococcus mitis SK321 |
45.815 |
100 |
0.459 |
| radA | Streptococcus mitis NCTC 12261 |
45.614 |
100 |
0.459 |
| radA | Streptococcus pneumoniae TIGR4 |
45.575 |
99.779 |
0.455 |
| radA | Streptococcus pneumoniae D39 |
45.575 |
99.779 |
0.455 |
| radA | Streptococcus pneumoniae Rx1 |
45.575 |
99.779 |
0.455 |
| radA | Streptococcus pneumoniae R6 |
45.575 |
99.779 |
0.455 |