Detailed information NTG1040135

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: AB8613_RS11665
• Genome accession: NZ_CP167894
• Coordinates: 2522829..2526218 (-)
• Length: 1129 a.a.
• NCBI ID: WP_372383849.1
• Uniprot ID: -
• Organism: Vibrio sp. BS-M-Sm-2
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2517829..2531218

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8613_RS11650 (AB8613_11650)	-	2518263..2519288 (-)	1026	WP_060982641.1	ABC transporter permease	-
AB8613_RS11655 (AB8613_11655)	-	2519291..2520277 (-)	987	WP_017633262.1	ABC transporter permease	-
AB8613_RS11660 (AB8613_11660)	-	2520447..2522129 (-)	1683	WP_060982640.1	ABC transporter substrate-binding protein	-
AB8613_RS11665 (AB8613_11665)	chiS	2522829..2526218 (-)	3390	WP_372383849.1	response regulator	Regulator
AB8613_RS11670 (AB8613_11670)	rsmC	2526435..2527457 (-)	1023	WP_372383850.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
AB8613_RS11675 (AB8613_11675)	-	2527568..2528653 (-)	1086	WP_285954254.1	AI-2E family transporter	-
AB8613_RS11680 (AB8613_11680)	hemL	2528996..2530291 (-)	1296	WP_146490649.1	glutamate-1-semialdehyde 2,1-aminomutase	-
AB8613_RS11685 (AB8613_11685)	erpA	2530588..2530929 (+)	342	WP_004734539.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127152.87 Da
• Isoelectric Point: 5.3636

>NTDB_id=1040135 AB8613_RS11665 WP_372383849.1 2522829..2526218(-) (chiS) [Vibrio sp. BS-M-Sm-2]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAMFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARSNAQQRYIQGSGDQIKTSILPESSSFIGSERYRLLHKRYHNAYLELLKRSDF
DDILLVDINGNVAYSVFKNDDYGTNLLTGKYKDSNLGITFQRLAKDVTDRRKSNEDYTPVIVSDFKDENGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKSSNIQTLLVGDDHLPRSLAHSQESINLSLDVVDKALAGETAVGTFDNTLNQA
IIAAYTPIELKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVVVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIREKMLLIKSQNDELEDNLKTIKKQNEDLQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPANQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLIQAGQDAS
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATQDELDSYNESGHYSHFQAPDLIDNSQQENSVISENP
DGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCEALRKQYDHAQLPII
MLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDQLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIRDDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKVEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGVNSNRINNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKATGEGKNKQELMREVLVDAMTN
AIIYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIEMLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=1040135 AB8613_RS11665 WP_372383849.1 2522829..2526218(-) (chiS) [Vibrio sp. BS-M-Sm-2]
ATGTTTAGATTCTATCGTAAGCAGAAGTTTAAGCGCCTTCAAAATACCCTAATGCTGGCATTTCTTGTCCTCAGTATTAC
CCCAGTGACACTTATCGCGATGTTTTTCCTCCAATCGCACAGTCAGGATCTCCAGGAACAAAGCACCTCACACCTTGTTT
CGGTTCGTGATACTAAGCAGCAGCAAATTGTCGATTACCTACAAGCCCAAGAATCCCAAGTGATGGGCTTTGTTCGCTCA
GAATTGGCCAATGCCAGTGGCGGGCGATTTTATGGTTTAATCAATGCTTTCCAACGATTGGGGTTAGATATTGACGAGGC
ACGCAGTAATGCGCAGCAACGCTACATTCAGGGATCTGGCGATCAAATCAAAACGTCGATTCTTCCAGAGTCCAGTAGCT
TTATTGGCAGCGAGCGTTATCGACTACTTCACAAGCGCTACCATAATGCTTACCTAGAGCTGCTTAAACGCTCTGATTTT
GACGATATTCTCTTGGTTGATATCAACGGTAACGTCGCTTATTCCGTCTTTAAAAATGATGATTACGGCACCAACCTGCT
GACTGGAAAATACAAGGACTCCAACCTAGGTATTACCTTTCAACGACTAGCGAAAGACGTAACCGACCGACGCAAATCTA
ACGAAGATTACACGCCGGTTATCGTTTCTGACTTTAAAGACGAGAACGGCAAGCAGACCGCATGGCTAGGCGCACCTATC
GTTCAACAGGGCTACCTACACAGTTACGCGATGTTTAGATTGCCAATCAACGGCATTACTAAGCTGATTGCGGATCTCAA
CAAGAGTTCGAATATTCAAACACTACTTGTGGGTGATGATCACCTGCCGCGTAGCCTTGCTCATTCACAAGAATCTATCA
ACTTAAGCTTAGATGTTGTCGATAAAGCATTGGCTGGCGAAACAGCGGTTGGCACCTTCGACAACACCCTGAATCAAGCG
ATCATCGCAGCCTATACACCAATTGAACTCAAGTACGCGACTTGGGCTCTTGTTGTCGAGCTTCCGGAGAAAGAGGCATT
TGCCCGTATTCATCAGTTAGAAAAGATCTTCGTGATAGTGATGTTAACCGCGATCATTCTGGTTGTTGTCGCATCGCACT
ATCTGTCTAACTTCATCACCTCACCGCTACTTAAACTGACGTGGGCAGCCGAGAAAGTTTCTGCGGGTGATCTTGATGAG
ACGATGATCAATACCGAACGTAAAGATGAAATCGGTCGTTTGGCGGTAAGCTTTGAACGAATGCAGCGCTCCATTCGTGA
AAAGATGCTGCTTATCAAAAGCCAAAATGATGAGCTTGAAGACAACCTCAAGACCATTAAAAAGCAAAACGAAGATTTGC
AGCTGGCTAACAAACTCAAAGATGAGTTCTTAGCAACCACCTCTCACGAATTGAGAACACCACTGCATGGCATGGTGGGC
ATTGCTGAAGCGTTGATATCTGGAGCGAATGGTCCTATTCCTGCTAATCAGAAGTATCAGTTGGATATCATCATCAATAG
TGGTCAGAGATTGGCGACCTTGGTTGATGATCTGCTTGATTATCACAAGATGCGCTATGGCAGCTTGGACATTAAGAAGT
CAGCCGTTGATTTGTCTGCAGCCACCAGCTTGGTCCTAGAGTTGTCTCATCACCTGTTGGGCAATAAGCCAATCCGTATT
ATTAACCAAGTGCCAAGTGATTTAGGGCTGGTTTCATCGGATCCTCAACGACTTGAGCAAGTAATGTATAACTTGGTCGG
CAATGCCATCAAGTACACCTCAGAAGGTAAAATTGTTATCTCTGCCAGCGTTATCGACGACAACATTCGTGTACAAGTTG
TCGATACTGGCCAAGGTATTCCAGCCGAGTATCTTGAACACATCTTTGAGCCATTGATTCAAGCAGGACAAGATGCGAGT
AACTACCGCCAAGGTGCTGGGCTTGGATTATCGATCAGTCGTCAGTTAATTGAGTTAATGGGCGGTTCGCTGTACGTAAG
TAGCCAGCCAATGCTTGGCACTACGTTTAGCTTTACCCTGCCCCTAGCTACTCAAGATGAGCTGGACAGTTACAACGAAT
CAGGTCACTACTCGCACTTCCAAGCACCTGATTTAATTGATAACAGCCAACAAGAAAACAGTGTTATCAGTGAAAACCCA
GATGGTCCGTTACTGGTTATCGCCGATGATGAGCCGGTTAACCTGCGAGTATTAGACAGCTTCTTGAAGTTAGAAGGTTA
TCGAGTACGTACTGCATGTGACGGCCCTGAAACCATCGAGTTAATTGAAAAAGAGAAACCGGAACTACTGCTGCTCGATA
TAATGATGCCAGGTATGAGCGGCTATCAGGTTTGTGAAGCACTGCGTAAGCAATACGATCATGCTCAATTGCCAATCATC
ATGCTAACGGCACTCAACCAAGCAGAAGACCGTGTTCGAGGTTTCGAAGCGGGTGCCAATGACTACTTATCGAAGCCATT
CAACAAACAAGAACTGGCGGCTCGAATAACAGCGCATCTATCAGCAAGTAAAGCCGAACAGAGGCGCCTTGAAAACGACC
AACTGCAACTCGAGCTCAAACATAGAGCGATGGTTGAGGCTAACCTGTTGGAAACTCAAGGACGCTTATTAGAACAGTTA
GAATCGGCACCTGAGGCTATCATCTGTATTCGTGATGACCAACGTATTCGCTTTGCTAACGAAGCGGCAGCGAAGCTATT
CAGGCGCGGTCAAGAACAACTTAAACGCTCAATGGCTGACGAGATCATCGCACCTAAATACCTTAAGGTGGAACAAGCAC
ACTACTGCGGTGACATTGATATCTATATAGATGACACACGTCAGCGCATACCAAGTGACATCCTTAAGCTACCTGAAGGC
TCAGGGCTCGACACCATGTATATCTTTAATGTAGGCGGTGGCGTTAACTCAAACCGTATTAATAACCTTGAGACCGCTGT
TGAAGCGCTTTCTAGCTATGCATTTGAAGGTGATAAGGACAAACTGCAACAATTGAAAGAACTCGGTGGTGAGTTTACTC
GTCTTGCAGATAAAGCCACTGGAGAAGGTAAAAACAAGCAAGAGTTAATGCGTGAGGTCTTAGTCGATGCGATGACTAAT
GCCATTATCTACTGGGAATCGGTGACTGGTGAAACCAAATTTGCTTTCGCCGAGAAGAGTGGCTTGTGGCGTGTCTACTT
AGATCGCAGTACGTTGCAAACTCGAACGCTAGACAAATACCTACGCGTCGAAACCTTACCAAAAACACCTCGCTGGCGAA
CGGTATTGAGTTCTATCGAATTCATACTTGAGCACTGTAAAGAACAAACACCAGAGAGGACGCATATTGAGATGCTAAGG
GATAAACTGCAGAAACTCTTGACCAGTTAA

Domains

Predicted by InterproScan.

• PAS domain (PAS_8) (880-914)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• Response regulator receiver domain (Response_reg) (726-836)

• HAMP domain (HAMP) (375-427)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.528	100	0.765