Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AB8613_RS11390 Genome accession   NZ_CP167894
Coordinates   2454522..2455040 (+) Length   172 a.a.
NCBI ID   WP_146490617.1    Uniprot ID   -
Organism   Vibrio sp. BS-M-Sm-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2449522..2460040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8613_RS11380 (AB8613_11380) gshA 2452268..2453836 (+) 1569 WP_372383834.1 glutamate--cysteine ligase -
  AB8613_RS11385 (AB8613_11385) - 2453847..2454497 (+) 651 WP_372383835.1 hypothetical protein -
  AB8613_RS11390 (AB8613_11390) luxS 2454522..2455040 (+) 519 WP_146490617.1 S-ribosylhomocysteine lyase Regulator
  AB8613_RS11395 (AB8613_11395) - 2455173..2456444 (-) 1272 WP_019825852.1 HlyC/CorC family transporter -
  AB8613_RS11400 (AB8613_11400) - 2456572..2457366 (-) 795 WP_019825854.1 inner membrane protein YpjD -
  AB8613_RS11405 (AB8613_11405) ffh 2457567..2458961 (+) 1395 WP_146490618.1 signal recognition particle protein -
  AB8613_RS11410 (AB8613_11410) rpsP 2459174..2459422 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  AB8613_RS11415 (AB8613_11415) rimM 2459446..2460000 (+) 555 WP_017063236.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18937.69 Da        Isoelectric Point: 4.5912

>NTDB_id=1040130 AB8613_RS11390 WP_146490617.1 2454522..2455040(+) (luxS) [Vibrio sp. BS-M-Sm-2]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADGWLAAMKDVLKVESQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1040130 AB8613_RS11390 WP_146490617.1 2454522..2455040(+) (luxS) [Vibrio sp. BS-M-Sm-2]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACACGCATGAACGCACCTGCAGTTCGTGTTGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGACATCTTATCTGAGAAAGGTATCC
ATACTCTAGAGCACCTATACGCTGGCTTCATGCGTAATCAATTGAACGGTTCAGATGTAGAGATCATCGATATTTCACCT
ATGGGCTGCCGCACTGGTTTCTATATGAGCCTGATTGGTACACCGACAGAGCAACAAGTGGCTGACGGTTGGTTGGCCGC
GATGAAAGACGTACTGAAAGTTGAGAGCCAGAATAAGATCCCTGAGCTGAACGAATACCAATGTGGTACCGCAGCAATGC
ACTCTTTGGATGAAGCGAAAGAGATCGCTAATGCGATCATCGCTGCTGGTATCTCTGTAAACAAGAATGATGAACTGGCA
CTGCCAGAGTCTATGCTGCAAGAGCTTAAAATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89

Multiple sequence alignment