Detailed information NTG1040117

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AB8613_RS09950
• Genome accession: NZ_CP167894
• Coordinates: 2189459..2190463 (-)
• Length: 334 a.a.
• NCBI ID: WP_048659182.1
• Uniprot ID: -
• Organism: Vibrio sp. BS-M-Sm-2
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2184459..2195463

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8613_RS09920 (AB8613_09920)	zapB	2184625..2184867 (+)	243	WP_008219652.1	cell division protein ZapB	-
AB8613_RS09925 (AB8613_09925)	rraA	2184961..2185479 (-)	519	WP_017061152.1	ribonuclease E activity regulator RraA	-
AB8613_RS09930 (AB8613_09930)	-	2185553..2186470 (-)	918	WP_210446820.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AB8613_RS09935 (AB8613_09935)	hslU	2186626..2187966 (-)	1341	WP_048605412.1	HslU--HslV peptidase ATPase subunit	-
AB8613_RS09940 (AB8613_09940)	hslV	2188025..2188573 (-)	549	WP_004729692.1	ATP-dependent protease subunit HslV	-
AB8613_RS09945 (AB8613_09945)	ftsN	2188797..2189336 (-)	540	WP_327785129.1	cell division protein FtsN	-
AB8613_RS09950 (AB8613_09950)	cytR	2189459..2190463 (-)	1005	WP_048659182.1	DNA-binding transcriptional regulator CytR	Regulator
AB8613_RS09955 (AB8613_09955)	priA	2190704..2192905 (-)	2202	WP_210446818.1	primosomal protein N'	-
AB8613_RS09960 (AB8613_09960)	rpmE	2193237..2193455 (+)	219	WP_076656772.1	50S ribosomal protein L31	-
AB8613_RS09965 (AB8613_09965)	-	2193788..2195095 (+)	1308	WP_146492423.1	malic enzyme-like NAD(P)-binding protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36531.05 Da
• Isoelectric Point: 6.4911

>NTDB_id=1040117 AB8613_RS09950 WP_048659182.1 2189459..2190463(-) (cytR) [Vibrio sp. BS-M-Sm-2]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKSEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPVSATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide

• Length: 1005 bp

>NTDB_id=1040117 AB8613_RS09950 WP_048659182.1 2189459..2190463(-) (cytR) [Vibrio sp. BS-M-Sm-2]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACAGCCACAGTATCACGTGCATTGATGAACCCTGAGAA
AGTCTCAGTTTCAACTCGTAAACGAGTGGAAACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTCGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACAATCGTTCCTGATATCTGTGACCCTTATTTCGCCGAGATCATTCGTGGT
ATCGAAGATGCCGCAGTAGAAAATGACTACCTTGTCTTACTGGGTGATAGCGGCCAACAAAAGAAGCGTGAGTCTTCGTT
TGTTAACTTAGTTTTCACCAAACAAGCTGACGGCATGCTGTTACTTGGCACTGACCATCCATTTGATGTCAGTAAGTCTG
AACAAAAGAACTTACCACCAATGGTGATGGCGTGTGAGTTTGCCCCTGAGCTTGAACTTCCTACCGTACACATCGATAAC
CTGACCTCGGCATTTGAAGCGGTTAACTACCTAGCTCAGTTAGGTCATAAACGTATTGCTCAAATCTCAGGCCCAGTATC
AGCAACACTTTGTAAGTTCCGTCAACAAGGCTACCAACAAGCGCTACGCCGTGCTGGAGTCTCAATGAATCCAGCCTACA
GTACCGTCGGTGATTTTACCTTTGAAGCGGGTGCTCAAGCAGTTCGTCAATTGCTAGCACTACCTGAGCAACCAACCGCT
ATCTTCTGTCACAACGATGCGATGGCCATTGGCGCTATTCAAGAAGCGAAGAAGCTAGGCTTACGCGTTCCTCAAGACCT
ATCGATTGTCGGCTTCGATGACATCCAATTTGCTCAATACTGCGATCCACCGCTCACCACCATCTCTCAACCTCGTTATG
AGATTGGACGCCAAGCGATGTTGATGATGCTTGATCTACTGAAAGGCAACGATGTGCAAGCAGGTTCGCGTCTACTTGAA
GCTAAATTAGTGGTTCGAGGCAGTACAGCACCACCTCGAATGTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-329)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	89.458	99.401	0.889
cytR	Vibrio parahaemolyticus RIMD 2210633	87.387	99.701	0.871